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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgctgactgcttaattgattttag

Basic information

species Vitis vinifera
transcript Vv14s0128g00720.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 5'ss of exon 19
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgctga-ctgcttaattgattttag
|||||||| |||||| | || || || ||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||| || | || || ||||| ||||||||     |||   ||   |||   |||  |  ||    |  ||   | | | | || | | | | | |||| |  ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTGCTTTATATATGgtaatattcatgatcttatattggttattacgtactaattatttaccatgtatattctaagccgttgatttgaatgcag

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 5'ss of exon 18
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgct---gactgcttaattgattttag
|||||||| |||||| | || || || ||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||| || | || |  ||||| ||||||||     |||   |     | | | ||    |  ||     |  |   | | || |     ||| | | | |  |  ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTCCTTTATATATGgtaatattcatg---tccttatactggttataactaccaataatttgccatatatgttctaagctgttgattcggatgcag

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 10
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctc---cccagctaagttctctttgctgactgcttaatt-gattttag
|||||||| |||||| | || || || ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| ||  || ||||||||||||| ||||||||     |||    |   |||   ||  | || ||       || |||     | |    |   |||  || | ||  ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAAAATGTCTATGCCAAATGCAAGTTCATTGCCCAATGTTTTATATATGgtaatatttatgattctgtgttggctatatgaccatcagttatggccaagcatgttcta--aatctcttgtttcggttgcag

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G059381_T01 (Zea mays), 5'ss of exon 19
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgctgactgcttaattgattttag
|||||||| |||||| | || || || ||||| ||||| |||||||| ||||||||||| ||||| |||||||| ||  || | ||||| ||||| ||||||||     |||    || | |      ||    | ||   |    || |   ||   |  || | |  ||  |  ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTCATTGCTCAATGCTTTATATATGgtaatattcatg---ctttcatctgagctgaaagcaccttcgt---gtacatcttaa-ggttgttgatctggatgcag

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ33980 (Selaginella moellendorffii), 5'ss of exon 20
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgctgactgcttaattgattttag
|||||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||| |||   ||  |||| || ||| | || |||||  |||| ||| ||    ||   ||||   ||   |  | ||  |    | |  | ||||||| | |     |              
AAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCATAAAAGCAAGTTCGTTGCTCAGTGTTTCGTCTACGgtgagaacaattttgttt-tgtgtctagcgagcggttttga-cacaattctcttcgattgtaacag------------

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ37488 (Selaginella moellendorffii), 5'ss of exon 20
AAGAACATCTTCAAGCTGGCACAGGGTGAATATATAGCACCAGAGAAAATTGAGAATGTATATGCCAAGTGCAAATTTGTTTCCCAATGTTTTATCTATGgtaaggcagatggagtttacttgcagattgggccctccccagctaagttctctttgctgact-gcttaattgattttag------------------------------------------------
|||||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||| |||   ||  |||| || ||| | || |||||  |||| ||| ||    ||   ||||   ||   |  | | || ||      |||      | ||||| | || |     | |||                                                  
AAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCAAAAAAGCAAGTTCGTTGCTCAGTGTTTCGTCTACGgtgagaacaattttgttt-tgtgtctagcgagtccacctggcgaaaggatcggtcgctgaatagcatggcaaagttttctccctatgtgtgactcggttttgacacaattctcttcgattgtaacag