1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcactatgtccctcaccttcttttctcttctccctttccgtattttgtttgttttcttaaatctctcattcttccttcgggtgcatctgaatcattattattattatttcttttctcag
species | Vitis vinifera |
transcript | Vv13s0156g00180.t01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|34319605|gb|CF372359.1|CF372359
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTGCTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGTCCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110391493|gb|EC956472.1|EC956472
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110418511|gb|EC984670.1|EC984670
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110361418|gb|EC924886.1|EC924886
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110429398|gb|EC995889.1|EC995889
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110367719|gb|EC931670.1|EC931670
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|34320089|gb|CF372843.1|CF372843
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|34363396|gb|CF404981.1|CF404981
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|34415969|gb|CF414723.1|CF414723
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|29785895|gb|CB343236.2|CB343236
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCGAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|71866113|gb|DT015168.1|DT015168
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110372355|gb|EC936513.1|EC936513
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|71866222|gb|DT015277.1|DT015277
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|34546327|gb|CF514559.1|CF514559
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|110362967|gb|EC926531.1|EC926531
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTTEST: gi|77577886|gb|DV217693.1|DV217693
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCTCTTGGATTGCCCCTTGAGAGGCCAAAAAGTGTT
EST: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAG TTAATATGGGACCGTGCT
genomic: ATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcacta ... cttttctcagTTAATATGGGACCGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCAGgttctcactatgtccctcaccttcttttctcttctccctttccgtattttgtttgttttcttaaatctctcattcttccttcgggtgcatctgaatcattattattattatttcttttctcag
- - - - - - - - - - - - - AAGGAG