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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt...

Basic information

species Vitis vinifera
transcript Vv11s0052g00320.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 17
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgatta-tatggcaattactttattacatattttgtcactgaagtcctgaatctggcttaattatttgaatttg--aaggttaaatttatt---tattttgagt----------
||  ||||||| ||||| ||||| || ||||| ||  |||| || |||||||| || ||||||||||| || ||||||||||||||||  |  | | |  ||    | | |          ||  || |  |    ||    | | |||     ||||||   ||     | |||||   |||||   ||          
GTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAGgttgggtgctgttgtcatattctcaatgttgtgcacttcggtggatacaaagatgatccatgattccagaaatttgctcagccacgacttattccctatttcttgtcaattttaag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 17
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcc--tgaatctg---gcttaat-tatttgaatttgaaggttaaatttatttattttgagt----------
||  ||||||||||||| ||||| || ||||| ||| |||| || || |||||||| ||||| || ||  ||||||| ||||||||  | |       | | ||||||| ||||| |     ||     ||   | | ||||   | | ||| |  |||    |||   |||||||   || ||    ||          
GTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGgtgcaatggtgtttattcactttat-acatactgacatacatgtttcagataattctgtttgttgaatctgattggccctgatttttaaattctcttcttcctggttgattttaag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 16
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt---
||| ||||||||||||| || ||||||||||||||| |||| || || |||||||||||||| || ||  | ||| |||||||||||  || |   ||  ||    ||| |   ||||   || |       || | ||   |  || |  |    ||| |||  |  |  | || |||   ||   
GTAAGGAGGCTTTCTGCCTGCGAGACCATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGTACATTGACTATGAATCAGgttagttgtggtgctgttttgatat-attgatttaaacaatatttctttgtaactacttacatcaactt--cttggagggcacttgcaattgtttcttgtttt

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 19
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttattt-attttgagt--
||  ||||||||||||| |||||||| ||||| ||  |||| || ||||||||||||||||| |||||  | ||| |||||||||||  || |    || |    ||   ||    ||| | |      |  | |      | || || || ||        |||  |  ||||| | ||  | |  
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGgttagttctgattcagta---ttgaaaccctatttataatatttatggtaagctacacatacttgttggagagcacttgttgcaaatattttaattctattgt

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 16
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt
||  ||||||||||||| |||||||| ||||| ||  |||| || ||||||||||||||||| |||||  | ||| |||||||||||  || |    || |      |    ||    | |   | |  |      |  |                                            
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGGTTAgttctgattcagtattgaaaccctattccctatttataatatttatggtaag--------------------------------------------

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttat-tacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt
||| ||||||||||||| |||||||||||||||||| |||| || || || ||||||||||| || ||  | ||  |||||||||||  || |   ||    | ||||| |    ||||   ||   ||    |   | |  ||   |  ||  | ||    |     | || ||    |||  |
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgc-attttatatgttgatttaaacaaacaatatttctttataactacttagttcaacttcttggagggtacttcttgcaattgttt

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 18
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattacttt-attacatattttgtca--ctgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt-
|| |||||||| |||||||| ||||| ||||||||| |||| ||||||||||| ||||| || ||||| |||||| ||||||||||    | | ||   |  | | | | | |      ||| |   | |    | |      | ||    | |||    |||   | ||  || ||| |||| |   
GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttgtgtttacaaatctgagttcgctccatgttagagttagactcagtgaacagtttccccacttg---ctgatactaaatcttttttctttttaaag

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaat-ctggcttaattatttgaatttgaag--gttaaatttatttattttgagt---------------------------------------------
|| || |||||||| || ||||| |||||||| ||| | || || ||||||||||||||||| |||||| | || || ||  ||||  ||  |   ||  |  |||  ||   |||||  | ||  |  |      | |  | ||   ||| ||  ||   ||   | |  |||   |||||||| |                                             
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag