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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04620.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 19
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
|||||||||| ||||| |||||||| ||||| |  || || ||||| ||| ||||||||||||| ||||| ||||||   || | |   ||     || |      |||  |||||||     |      ||||   ||  ||     || ||| |  | |  | |  |       || | |||     | ||                                                            
GTACTGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGACTTCTATTTATGCAGTCATGCGGGAATTCAGgta---tgataattaca----gtact------cctataatttatct---acggcttaaacttcgatttt----gttcctgtacaaaatttatttacaccccatttgtatgtataaaaggg-----------------------------------------------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: PP1S7_194V6.1 (Physcomitrella patens), 5'ss of exon 16
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagt-tctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
| ||||| || || |||||||| || || || |  ||||||||||||||||| ||||||||||| ||||| |||||  | | |  |  | || |  | |    |    |||||| | | ||   |   | |||    ||||  | |  || | || |||  |    |  | ||  || | ||                                                                        
GGACTGTTGTGGACTCGAAGATTTGTCACCCTACGGAGTTTGACTTTTATCTTTGCAGTCATGCTGGAATTCAGgt-tcatatccattttat-acttttattgatttgtgaaatgtttcatc--tgctagaaatgtggaagcatatgtatctttgtaaggaa----tagaatttctgatcgc------------------------------------------------------------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
| |||||||| ||||||||||| |||||||| |  ||||||||||| || || ||||| ||||| || || |||||| | || ||  | |  |     ||| | |   ||    | |||  |    |  |    ||||                                                                                                                   
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaacatgatgg-caccctggcctttgta-gctttg---ctcatacgacgagactatgttacag-------------------------------------------------------------------------------------------------------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
| |||||||| ||||||||||| |||||||| |  ||||||||||| || || ||||| ||||| || || ||||||  ||| || |  |  |     ||| | |   ||    | |||  |    |  |    ||||                                                                                                                   
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaagttgatggagcc-ctggcctttgta-gctttg---ctcatacgacgagattatgttacag-------------------------------------------------------------------------------------------------------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ14095 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
| |||||||| ||||||||||| |||||||| |  ||||||||||| || || ||||| ||||| || || |||||| |||| || |  |  |     ||| | |   ||    | |||  |    |  |    ||||                                                                                                                   
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaacttgatggagcc-ctggcctttgta-gctttg---ctcatacgacgagactatgttacag-------------------------------------------------------------------------------------------------------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ19863 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgttgaactcattaaatattgcaaggcctgaaatttataatagataagaaaaacacagaagttctcaatttctgcaagagaactttcaagttggtgttggcatgccaggatggttttgaatgtaaagtactacatgtcaagaatttgtttgtactgaaattgacatttggcag
| |||||||| ||||||||||| |||||||| |  ||||||||||| || || ||||| ||||  || || |||||| |||| || |  |  |     ||| | |   ||    | |||  |    |  |    ||||                                                                                                                   
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGGCGGCATTCAGgtaacttgatggagcc-ctggcctttgta-gctttg---ctcatacgacgagactatgttacag-------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407837|gb|CF213464.1|CF213464
EST:     GCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAG                         GGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTT
genomic: GCCATCCCAGTGAGTTTGACTTTTATCTATGCAGTCATGCAGGAATCCAGgtaccttgtt ... catttggcagGGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTT