Sequence
atgc intronic sequence ATGC exonic sequenceTCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagtatagataacatattctgagttttttatgtttttattggggtgtggttttcaatttgcaaatccatgtccaggtgcatgtcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os10g42439.1 (Oryza sativa), 5'ss of exon 19
TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagtatagata---acatattctgagttttttatgtttttattggggtgtggttttcaatttgcaaatccatgtccaggtgcatgtcat--
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TTGGATGGCAAGGTGGAAGTATACTGGCACTAGAGACACTAAAGCGTGTTGTTGGTGCTGGCAATCGGGCTAGAGATGCACTTGTTGCACAGGGGCTAAAgtaagctgttcaaatcatacatatgtagggataacttaaggaatcaatgtt---gtttgattttaacacgaaaattttggcactatgt--aggatctctccaaaa
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 19
TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagt--atagataacatattctgagttttttatgtttttattggggtgtggttttcaattt---gcaaatccatgt-ccaggtgcatgtcat
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TAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagcttgtataattgaaaattgacacacttttaactgattcaatattttaggacttggagatccaaattcatgataaaactttgcattagctgca------
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA17G12950.1 (Glycine max), 5'ss of exon 20
TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagt--atagataacatattctgagttttttatgtttttattggggtgtggttttcaatttgcaaatccatgtccaggtgcatgtcat
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TAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCCGGAAACCGAGCCAGGGATGCTCTTGTTGCACAGGGACTTAAgtgagtaccttgtataattgaaaattgatgcgcttttaactgattcaatattttttgacttggagatccaagttcatgatataactttgcattagctgca--
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA05G08040.2 (Glycine max), 5'ss of exon 19
-------------------------TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagtatagataacatattctgagttttttatgtttttattggggtgtggttttcaatttgcaaatccatgtccaggtgcatgtcat
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GTTGTTCCACTGCTAATGAAAGCTATAGGgtggcaaggtggaagcattttagctcttgagactctaaaacgtgttgtggttgcaggaaaccgagccag-------------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382043|gb|EC938328.1|EC938328EST: GTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAA GGTTGGCCTCGTGGAAGTACTCCTTGGCCTTCTTGATTGGAGGGCTGGAGG
genomic: GTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggct ... gatcatgcagGGTTGGCCTCGTGGAAGTACTCCTTGGCCTTCTTGATTGGAGGGCTGGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagtatagataacatattctgagttttttatgtttttattggggtgtggttttcaatttgcaaatccatgtccaggtgcatgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaca