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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagttttgagaatctaattagaggcatttatgtggaaggtcttgaatgcattgataaccttatataatcatgtgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03230.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA16G08430.1 (Glycine max), 5'ss of exon 19
TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagttttgagaatctaattaga--ggcattt------atgtggaaggtcttgaatgcattgataaccttatataatcatgtgcag------------
||||| || || |  ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| |  |  |  |||||||  ||||  ||    || |  |  |  ||| |  | || ||      |  || ||   | | || | |||   ||  |||  ||   |  |  ||            
TTGCAAAAAGCAGTGAAACTATTAGATTCAGGGGCTGTCAGGGCCACAAGATTTCTCTGGCGATATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcagttcattacatgtttaaaatgtcaatttagctgagatgaaataccattaaaggatttgaaattttacttaccaaccttgagaaattgcaacag

upper sequence: Vv11s0016g03230.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA01G01230.1 (Glycine max), 5'ss of exon 21
TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaa--------gttttgag----aatctaattag-aggcatttatgtggaaggtcttgaatgcattgataaccttatataatcatgtgcag
||||| ||||| |  ||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||| || ||| |  |  |  |||||||  ||||  ||         ||||  |     ||| || || | | | | |    | |||||  |||||    ||  | |||||    |||      |||
TTGCAAAAGGCAGTGAAACTATTAGATTCTGGGGCTGTCAGGGCCACAAGATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcattagatgtttaaaatgtcaatttagttgggatgaaataccattgaaggatttgaa-attttacttaccttgagaaattgcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299325|gb|CB976119.1|CB976119
EST:     GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
genomic: GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
EST: gi|33404538|gb|CF210165.1|CF210165
EST:     GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCCCCTTCAG
genomic: GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
EST: gi|110364327|gb|EC923886.1|EC923886
EST:     GATTTCTCTGGCGGTATCCAACTGCCCGATTACTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
genomic: GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
EST: gi|71876371|gb|DT025426.1|DT025426
EST:     CTCTGGCGGTAT-CAACTGCCCGATTACTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
genomic: CTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
EST: gi|110362696|gb|EC926245.1|EC926245
EST:     GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
genomic: GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
EST: gi|30299403|gb|CB976197.1|CB976197
EST:     GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTG                         GTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG
genomic: GATTTCTCTGGCGGTATCCAACTGCCCGATTGCTCCTGCTTTTCTATCTGgtaggaagtt ... tcatgtgcagGTATTTGTGCATCTCTTCTTGATGTACCTTTTACATCACCTTCAG