Sequence
atgc intronic sequence ATGC exonic sequenceGCAGTAGAGCGTGGAGCTGGTATGGATGGACAGAAGATAACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 19
GCAGTAGAGCGTGGAGCTGGTATGGATGGACAGAAGATAACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacag
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GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGTgtgagt--aattgtagtgcta-------cactagat--acttattttgacatgt----aaagtgggtcttattctgttgatctgttgccattgcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 19
GCAGTAGAGCGTGGAGCTGGTATGGATGGACAGAAGATAACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacag
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GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTTATCAAGCATCGTATGGGAGATCTGTTCTACCGATTAGTgtgagt--agttgtagtgcta-------cactaga--aacttattttgacatgt----aaagtgggttttattctgttgatctgttgtcattgcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 19
GCAGTAGAGCGTGGAGCTGGTATGGATGGACAGAAGATAACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaa--attgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacag
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GCGGTTGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACCTACACTCTTATCAAGCATCGCTTAGGAGATCTTTTCTACCGTTTAGTgtaagcaaacgacttgcttctcctcgatttctctatgactctgttacatagcgctctaataaaatg-gtctgaaacgg---aattatgggaactacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22010913|gb|BQ795947.1|BQ795947EST: ACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGT GTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAA
genomic: ACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaa ... tacactacagGTCTCAGAAATTCGAGGACCCAGCAGAAGGAGAAGAAGTTCTTGTGGCTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGTAGAGCGTGGAGCTGGTATGGATGGACAGAAGATAACTTACACCCTTATCAAGCATCGGTTGGGAGATCTGTTCTATCGTCTTGTgtaagtgaaattgccatgttaacaaagacaaaagatgaactgcatgtgagattttaaggaagcatgtcttaatcagctcatatatctacactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC