Sequence
atgc intronic sequence ATGC exonic sequenceTATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os04g55230.1 (Oryza sativa), 5'ss of exon 19
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactct-ctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag------
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TATGATGGAAGAAGGTATGGGAAATGTTCATGTCGCTCTCAGGTACTTGCATGAAGCACTGAAGTGCAACAAGAGACTGCTAGGAGCTGATCACATTCAGgtaaacaaaactacatatttttctcttaccgtgctttcacagcttta-tctgttttcctggaaac--aataatctaattgttttttttgttggacttgattga
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM5G892758_T01 (Zea mays), 5'ss of exon 2
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatt--tgaacttctcat-cctgcag--
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TATGATGGAAGAAGGCATGGGAAATGTTCATGTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaagctaaat-tatatcctttattttccaaagtgtcgtatgattgtagccattgaattatctttgcaaactaaagaacttctaaggtgtaaaggt
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G086030_T01 (Zea mays), 5'ss of exon 19
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctct--tagtgtaagtttga--tgtattgggagctaaattttgtatttgaacttctcatcctgcag--
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TATGATGGAAGAAGGCATGGGAAATGTTCATGTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAACAAGAGGTTGCTAGGAGCTGATCACATCCAGgtaaaataagctgttttttattcttcaatgtgttatagggttgtatccatttgaattgtattttcaccctaaag--aacttctaaggccttgttcggttatt
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 20
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag
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TATGATGGAAGAGGCCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGgtctctctctctctc--tccctttctccctccccccctctctcc---ccccatggat--ggaacagtgctttataca-gtattttccatgttatag
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 18
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag
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TATGATGGAAGAGGCCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCAGATCATATACAGgtcttactttctctccctccccctccccctccccctttcttc-----ccccatggat--ggaacaattctttataca-gtattttccatgttatag
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: PP1S363_15V6.1 (Physcomitrella patens), 5'ss of exon 15
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgttt-ttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag------------------------------------------------------
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GATGATGGAAGAGGGCCTGGGAAACATTCATGTTGCTCTGAGGTATTTACACGAGGCTCTGATCTGCAATCAGCGGCTTCTGGGAGCTGACCACATTCAGgtttattccgaccctcaattctgctgggacactaattact--tccagctgtgacgtcgtgaatgacggtgtaaccattagagctgtaatcgctgcagttttttattttattattattattattattattttcaaaattactttttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698822|gb|EE076760.1|EE076760EST: ATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAG ACTGCTGCCAGCTATCATGCCATAGCCATAGCACTGTCTCTGATGGAAGCA
genomic: ATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctct ... catcctgcagACTGCTGCCAGCTATCATGCCATAGCCATAGCACTGTCTCTGATGGAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGATGGAAGAGGGCATGGGAAATGTTCATGTTGCTCTCAGATACTTGCATGAAGCACTTAAGTGCAATCAAAGATTACTAGGAGTGGATCACATACAGgtttttctctctctccatccctctctcactctctctcttagtgtaagtttgatgtattgggagctaaattttgtatttgaacttctcatcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA