Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 16
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
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TTGTGCGACTGTGCAGCCAATCGTGTCGATTGAGAGAACAGTTTTCTACCGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCCTATGCCATTGCTCAGgtaacttatggtggtagctaaggcagttaaggtataat-------ttgtttccaggagttg--ctcaactcttgataatttgttgtag----------------------------------------
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 20
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagca-acatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
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TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatg--tcgttgaactgtgcagacacagtgataactaaggtgct-------atttgctctccgtagcctctcaaattttatgcttcgcag--------------------------------
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 16
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
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TTGTTCAACTGTGCAGCCAATTGTTTCAATTGAGAGGACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCAATGCCATATGCCATTGCTCAGgtaaagaaatatcatagt-atacagaata--cagtggtgactaaggtgctatc-----ttctctccgcagtcg--ctcagtttttatgcttcgcag--------------------------------
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA08G21540.1 (Glycine max), 5'ss of exon 20
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgag-gaaatggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatat-aatctattttggtggtatgcag
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TTGTCAAACTGTTCAACCAATTGTAGCCGTTGAAAGAACAGTGTTCTATCGAGAAAGAGCTGCTGGAATGTATGCTCCTTTGCCTTATGCCTTAGCACAGgtaagtggattgatttacttca--aagaacaattttattttttagt--attcgt-------tgcttgttatgaggccattgccttgtcacgttat----ccttatgccaatgcatttt--taat-tgcag
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 20
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatgg-tctatttaagcaacatgagtgataataaccagttcatttctgtaaat-ttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
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TTGCCAAACTGTTCAACCAGTAGTAGCCGTTGAAAGAACGGTATTTTATCGAGAAAGAGCTGCTGGGATGTATTCTGCTTTGCCTTATGCCATTGCACAGgttaaaggatggatttattttttagaca---actataaaacttattacatgt-tgtatttgttgcttattatgctagcatttttgtttcatttgcag---------------------------------
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 21
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaat-ggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatat-aatctattttggtggtatgcag
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TTGCCAAACTGTTCAACCAATTGTAGCCGTTGAAAGAACAGTGTTCTATCGAGAAAGAGCTGCCGGAATGTATGCTCCTTTGCCTTATGCCTTAGCACAGgtaagcagattgatttacttca-----aagaataatttta-----ttttctagtgttcatt-gcttgttatgatgtcattgccttgttacgttat----ccttatgccaatgcatttt--caat-tgcag
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 21
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatgg-tctatttaagcaacatgagtgataataaccagttcatttctgtaaat-ttgctt-caaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
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TTCTTGTACTGTTCAACCAGTAGTAGCCGTTGAAAGAACAGTATTCTATAGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCTTATGCAATTGCACAGgttaaaggatggatttattttttagaca---attataaaacttattacatct-tgtatctgttgcttattatttctagcattgttgtttcatttgcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967137|gb|GW840012.1|GW840012EST: GTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAG GTGGTTGCTGAAATACCATATGTGTTCGTTCAAACCGCATACTATTCACTT
genomic: GTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaat ... tggtatgcagGTGGTTGCTGAAATACCATATGTGTTCGTTCAAACCGCATACTATTCACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagcaacatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT