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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcacttgaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02190.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os03g03710.1 (Oryza sativa), 5'ss of exon 19
GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcacttgaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag
  |||||| ||||||||||| ||||||||  | ||  | || |||||||||||||||||||||| ||  ||  | |||  |  |   ||| ||||     | |   ||    ||   |||  | |   |   || |||    |   |                           
AATGATGACCCATACTTCAACAAGCTTATCAGGATTTTGGCAACTAGATGCATGACACAGgtaagatagctacattga--agctccccctattttaacatattgatag----ctactatgcccat---aaccaaccctgttggaacacacag----------------------

upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G031859_T04 (Zea mays), 5'ss of exon 14
GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcacttgaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag
 |  |||| ||||||||||| ||||||||| ||||  | ||||||||||||||||||||||||| || |    |||||       |  ||  |||  | |  |   ||| |||  | |  ||    |   | ||  |                                     
AGCAATGACCCATACTTCAACAAGCTTATTAGAATTTTGGCGACTAGATGCATGACACAGgtaagattagg-aaatgaagtgtccattctaatttactgatttcaaagaattcatataactttccctgtcacaacacag-----------------------------------

upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 19
GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatca-cttgaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag
|||||||||||||||||||||||| | || || ||||| || ||||| |||||||| |||||||  | |  ||||||||  |  || |  |    |    ||| |  | |    |  | | || || |       |  |     ||| |||||                      
GGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaatttgaatgagaacctagatttagaatttacaagaa-aaaataaattgagtttttgttttg-----ttttgt---tttgtttttag--------------------

upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA06G14870.2 (Glycine max), 5'ss of exon 19
GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcactt-gaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag
||||||||||| |||||||||||| | || || ||||| || ||||| |||||||| |||||||  | | || ||||||  |   | |  |    |    ||  || | | |   || || ||  | ||      |  ||                                   
GGTGATGATCCTTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgattttgaatgagaacccagatttagaatttacaaaaataaaatt---gagattttgttttat-----ttttag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815930|gb|FQ403547.1|FQ403547
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCCTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351013790|gb|FQ433942.1|FQ433942
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGGCACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351054754|gb|FQ462784.1|FQ462784
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351048032|gb|FQ441204.1|FQ441204
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351055546|gb|FQ442342.1|FQ442342
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351025060|gb|FQ433477.1|FQ433477
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351036566|gb|FQ457279.1|FQ457279
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351033178|gb|FQ461950.1|FQ461950
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|351054627|gb|FQ456824.1|FQ456824
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|349830463|gb|FQ416761.1|FQ416761
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT
EST: gi|349810328|gb|FQ401774.1|FQ401774
EST:     CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAG                         GCAGTTTACTTCTGTAGTGGGGATCCTAGTCCCCCAGAATTCCATCATTAT
genomic: CATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatcac ... caaaattcagGCAGTTTACTTCTGTAGTGGGGATCTTAGTCCCCCAGAATTCCATCATTAT