Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactag

Basic information

species Vitis vinifera
transcript Vv06s0009g03750.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 5'ss of exon 8
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtcatgtagttggttatatttttctc-----aattatacttattatagctttatgcactag--------------
 || || || || ||||||||||| || || ||||| |||||||| ||||| || || || || |||||||| ||||||||||| |||||||| |||||||||    ||   | || ||   | |  |      |||    || ||| |||      | ||   | ||||   | ||| || |   |              
TCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTAATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATTTACAGgttccc-ctctctctctctctctctcatatatgggttttcaatttttgtcttgaaagagtttctcatatttcgggtttttgaatgtgtgatgtcatgctag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 18
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtca---tgtagttggttatatttttctcaattatacttattatagctttatgcactag---------------------------------------------
                               ||||| |||||||||||||| ||||| || || |||||||| || |||||||| ||||||||  | |||||| |  ||     || |||  |   |  |   |||   |   |  |      | | ||||  |||||||   ||||||    |                                              
------------------------------TATTAATCTTGCAACTGCAGATACAGTGATAATTTTTGATTCAGATTGGAATCCACAAAATGATCTGCAGGTTCTTCCTCTCATTCTCTTCCTCCTGCAAgtgtgtgtctaacttaaaaagatttatttatctttattatgtttttatggttcaatttttgctaggccatgagtagggcacataggattggccaacagga

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G141258_T01 (Zea mays), 5'ss of exon 22
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgtt---ttgactggatgtcccttagtt--tggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactag-------------
 ||  | || || ||||| || || || || ||||| || ||||||||||| ||||| || || |||||||| || |||||||| |||||||| || ||||||   ||  ||   | |||| | | |  |||   ||   |||  | ||  ||    |  | | |||||  |  || | |    ||              
TCTTTTATCCACACGTGCCGGAGGACTTGGTATTAATCTAGCAACTGCAGATACAGTGATAATTTTTGATTCAGATTGGAATCCACAAAATGATTTGCAGgttctcttctctctctttcccctcgctcctggaagtgagtttgtgtttaacttgtgaagatttccttatctttcctatgtttcttaatatggctcatttc

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 19
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactag
||| |||||||| || || || || ||||| || |||||||| || |||||||| ||||| |||||||||||||| |||||||| ||||||||| | ||||| || |   ||| |   ||  ||   | |     |    ||  |  | || | |  ||||| ||||  ||||  |      
CCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAACCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGgtattcagctgatataattttatt--attaatccatgaaatagttggtgcttactgttactt-ttatgtcttttag------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 19
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactag
||| |||||||| || || || || ||||| || || ||||| || |||||||| ||||| |||||||||||||| |||||||| ||||||||| | ||||| || |   |||     ||| |||  |||| || |     | || |||     |||    | |||   || | |    |||
CCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAATCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGgtattcagctgat-----ttaattttatcat-taatcaacaaaatatttggtgtttac---tgttacttctatgttttttag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgact----ggatgtc-----ccttagtttggt-catgtagt-tggttatatttttctcaatta-tacttattat-agctttatgcactag-----------------------------------------------------------------------------------
| | || || ||||||||||||||  |||| ||||| ||||| || |||||||| || ||||||||||| || || ||||||||||| ||||| ||||||||||   |       ||||      ||| ||||  || |||| ||| | | |||| | |   |  | | ||  | ||   ||  || ||    |                                                                                    
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ29460 (Selaginella moellendorffii), 5'ss of exon 18
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgactggatgtcccttagtttggtcatgtagttggttatatttttctcaattatacttattatagctttatgcactag
||| ||||||||  | || || ||||| || || || ||||| ||||||||||| || ||||| ||||||||||| |||||||| || |||||| | || ||        | | ||  || |     |||   ||||  ||  |  || ||   |                           
CCTACTTTCAACAAGAGCGGGGGGCCTTGGAATCAATCTTGCTACTGCAGACACTGTGATTATCTTTGATTCTGATTGGAATCCACAGAATGACCTTCAAgta------agttttctttttgaaaattcaca-agtttattccacgtt-ctatgtag-------------------------