1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcattttttatttgtttaagaaattttcatgatgtaatttttcttccatgcatacacatgatgatagcttattagacatacttgtcatattaca...
species | Vitis vinifera |
transcript | Vv06s0004g06920.t01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71882349|gb|DT031404.1|DT031404
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|352769630|gb|FQ468558.1|FQ468558
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71888454|gb|DT037509.1|DT037509
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|352768928|gb|FQ468119.1|FQ468119
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCT--GGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71889378|gb|DT038433.1|DT038433
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71887336|gb|DT036391.1|DT036391
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71887343|gb|DT036398.1|DT036398
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71890359|gb|DT039414.1|DT039414
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|27581545|gb|CB004240.1|CB004240
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAAATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|34362375|gb|CF403960.1|CF403960
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|110360631|gb|EC923892.1|EC923892
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|110415443|gb|EC981352.1|EC981352
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|77581485|gb|DV219679.1|DV219679
genomic: GATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|352781433|gb|FQ468277.1|FQ468277
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71888451|gb|DT037506.1|DT037506
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71881182|gb|DT030237.1|DT030237
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|71885715|gb|DT034770.1|DT034770
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|27582400|gb|CB005095.1|CB005095
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAAATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|352774206|gb|FQ474729.1|FQ474729
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTAEST: gi|352768854|gb|FQ468045.1|FQ468045
genomic: GAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
EST: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGA GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
genomic: GATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcat ... ttaattgcagGTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATATGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcattttttatttgtttaagaaattttcatgatgtaatttttcttccatgcatacacatgatgatagcttattagacatacttgtcatattaca
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa