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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagtgttttgtatatgtgattattgattattccacattcataaaaaattgtggctcactaagtcatttgtgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g06860.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 19
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaa-atagtgttttgtata---tgtgattattgattattcc--acattcataaaaa--attgtggctcactaagtcatttgtgcag
||||||||||||||| |||||||||||||| |||||| | ||||| ||||| |||||||| || ||||||||  | |  |||||||| ||  |||| ||||||         ||| || ||   |    || ||  | | | |  |||||  |    |  ||| | |     |  ||||| | |||||
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatttgctacatttagtttaaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 19
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatag---tgttttgt---atatgtgattattgattattcc--acattcataaaaa--attgtggctcactaagtcatttgtgcag
||||||||||||||| |||||||||||||| |||||| | ||||| ||||| |||||||| || ||||||||  | |  |||||||| ||  |||| ||||||   | |    |||| ||   |  |    || ||  | | | |  |||||  |    |  ||| | |     |  ||||| | |||||
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatttttgctacgtttagtttgaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagtgttttgtatatgtgattattgattattccacatt----cataaaaaattgtggctcactaagtcatttgtgcag--------------------
||||||||||||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || |||||  | |  |||||||||||  ||||||||||||| || || |  ||   ||| |  |||  || ||||||  |    | |         ||    | ||  | | || ||                       
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaaa-tattgctccgttcctgtaaacattt-ttgttccaccctactgctttccctcccctgttcaagtatataacttttgtcaaacctgtggcacatctgtag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 10
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagt---gttttgtatatgtgattattgattattcca---cattcataaaaaattgtggctcactaagtcat-----ttgtgcag-------------------
||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||||||||||     ||   ||||  |||      |       | | |||   ||||   |   | ||    |   || |||  |     ||||| |                    
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 5
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagt---gttttgtatatgtgattattgattattcca---cattcataaaaaattgtggctcactaagtcat-----ttgtgcag-------------------
||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||||||||||     ||   ||||  |||      |       | | |||   ||||   |     ||    |   ||  ||  |     ||||| |                    
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtatttctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttcttttcttccttcttggttctaattattgtgaaatcttgggggacatctgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G352837_T02 (Zea mays), 5'ss of exon 6
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgta-----aaatagtgttttgtatatgtgattattgattattccacattcataaaaaattgtggctcactaagtcatttgtgcag------------------------
||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||||||||||         ||| | || |     |     |   |     | ||||   |   | ||    |   ||  ||  |   |   |                        
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgcccctccccctctgtaccaacccattggcatttattttcttccttcttggttctaattattgggaaatcttgggggacatatgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgta--------aaatagtgtttt------gtatatgtgattattgatt------attccaca-ttcataaaaaattgtggctcactaagtcatt-tgtgcag
 ||||||||||||||||| |||||  |||||||||| ||||||||||||||||| ||| |||||||||||||| | | ||||||||| |||||||||||||||          ||| ||||         |  ||||  |  || |||      |||||||| |||||  | ||  |   || ||||   |||  | | |||
AGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTTGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGgtactgtttctgtataatgttgccataagattcatgttctattttattttttgaattccacaattcatctataagagaatcttactagtacatgatttacag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgta--------aaatagtgtt-ttgtatatgtgattattgatt-----------attccaca-ttcataaaaaattgtggctcactaagtcatt-tgtgcag
 ||||||||||||||||| |||||  |||||||||| || |||||||||||||| ||| |||||||||||||| | | ||||||||| |||||||||||||||          ||| | ||    ||   || ||  |  |||           ||||| || |||||  | ||      || ||||   |||  | |||||
AGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTCGAGTGTATGAAAGATCTTTTACTTGTCAATCTTAGGGGCAATCTTCAAATAATTGTGCAGgtactgtttctggataattttgccataagagtcatgttctattttattttttgaattccgcaattcatctataagaaaatcttactagtacatggtttgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaa---aatagtgttttgtatatgtgattat-------tgat-tattccacattcataaaaaattgtggctcactaagtcatttgtgcag--------------------------
 ||||||||||||||||||||||||| ||||||||| || ||||| |||||||| ||| |||| ||||| ||| | | ||| ||||| |||||||||||||||    | ||| | || |||   |  || ||       |||| | ||  ||| | |||     ||| |  |   ||     | | |  |                           
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 17
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaa---aatagtgttttgtatatgtgattattgattattccacattcataaaaaattgtggctcactaagtcatttgtgcag-----------------------------------
 ||||||||||||||||| ||||||| ||||||||| || ||||| |||||||| ||| |||| ||||| ||| | | ||| ||||| |||||||||||||||    | ||| | || |||   |  || || | ||     | |||  ||| || || |   |   |   |  ||| |                                       
AGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataat-gtttccatgatatttttaacaa-ttatctttttttggtttttttataatttcaataaaagaatcttactagtacatgatttgcag