Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttcatcttttgcctgctgactgcttatttctctgatgatag

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 5'ss of exon 19
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttcatcttttgcctgctgactgcttatttctctgatgatag--------
||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||| |||| ||||||||| |||||||||| |   ||||  || ||    |   |   | |    ||   | |    |   |  |   | | ||||          
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTGCTTTATATATGgtaatattcatgatcttatattggttattacgt-actaattatttaccatgtatattctaagccgttgatttgaatgcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 5'ss of exon 18
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttc--atcttttgcctgctgactgct----tatttctctgatgatag
||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||| |||| |||| |||| |||||||||| |   |||   || |||   |      | |  ||  ||||||   |   | ||    | ||  |  |     ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCCGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTTATTGCGCAGTCCTTTATATATGgtaatattcatgtccttatactggttataactaccaataatttgccatatatgttctaagctgttgattcggatgcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G059381_T01 (Zea mays), 5'ss of exon 19
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctc-tttcatcttttgcctgctgactgcttatttctctgatgatag
||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||  |||| || |||||| |||||||||| |   |||   |  |   |           | || | | | |  | |  | || ||  ||||     ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTCATTGCTCAATGCTTTATATATGgtaatattcatgctttcatctgagctgaaagcaccttcgtgtacatcttaa--ggttgttgatctggatgcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 10
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttcatc--ttttgcctgctgactgcttatttctctgatgatag------
||||||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||| ||  ||||||| || ||| |||||||||| |   ||||   | |              ||||  || || |     |     ||  |||||  |    |      
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAAAATGTCTATGCCAAATGCAAGTTCATTGCCCAATGTTTTATATATGgtaatatttatgattctgtgttggctatatgaccatcagttatggccaagcatgttctaaatctcttgtttcggttgcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 19
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatga--gattttacaaatc---tctctttcatcttttg--cctgctgactgct--tatttctctgatgatag
||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||||||||| |||   |    |   ||||||    | | | | ||| ||||  |  |||  ||| |  |  || | || |  |||
AAGAATATCTTTAAGTTGGCACAAGGCGAGTACATTGCTCCTGAGAAGATTGAAAATGTATACGCCAAATGCAAATTTGTGGCGCAGTGCTTTGTATATGgtaaggaaataaatcattcccacaaattcggtgtgtgtgatcgtttgtactagcttgctgatgcttcttttttgtttgtag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 19
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatga--gattttacaaatc---tctctttcatctttt------gcctgctgactgcttatttctctgatgatag
||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||||||||| || || |||||||||||||||| | |||   |    |   ||||||    | | | |  || |||      || || ||| ||||| ||| |    || |||
AAGAATATCTTTAAGTTGGCACAAGGGGAGTACATTGCTCCTGAGAAGATTGAAAACGTATATGCCAAATGCAAATTTGTGGCGCAATGCTTTGTATATGgtatggaaataaatcattcccacaaattcagtgtgtgtggtcatttgtactagcttgttga-tgcttcttttttctttg-tag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 19
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgag-attttacaaatctctctttcatcttttgcct-gctgactgcttatttc-tctgatgatag-------
|||||||| || || ||||| || || ||||| |||||||||||||||||||| || || ||||| |||||||||||||| | |||||||||  |||||||||    |||  |  ||  || |    | | | | |  |||||| |       | |  || ||  ||| |   |        
AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattatagtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: PP1S408_23V6.1 (Physcomitrella patens), 5'ss of exon 21
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatg---agattttacaaatctctctttcatcttttgcctgctgactgcttatttctctgatgatag-------------------------
||||| || ||||||||||| |||||||||||||| || || ||||| || |||||||| ||   |    |    ||  |  | ||||| |   || |||||| |   | |    | ||     || |||   |||| | |  |     |    |||   |      |||||                            
AAGAATATCTTTAAGTTGGCTCAAGGAGAGTACATTGCCCCGGAGAAGATCGAGAATGTCTACCTTCGCAGTCGTTTCATAACACAGTGTTACATACATGgtatgttcattttttaaatggaggaactcttcatttcttgtggtctaaacaagttgcaactggtgtagatgacttaagatttttttttcatctgaaatga

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ33980 (Selaginella moellendorffii), 5'ss of exon 20
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttcatcttttgcctgctgactgcttatttctctgatgatag
||||||||||||||| | ||||| || || |||||||| |||||||| ||||||||||| |||  |||| |||| || ||||| ||||| || || || ||| |||| |||    ||||     |||  |   |   |||  |      ||   |   |||  |  | | ||
AAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCATAAAAGCAAGTTCGTTGCTCAGTGTTTCGTCTACGgtgagaacaattttgttttgt--gtctagcgagcggttttgac------acaattctcttcgattgtaacag

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: EFJ37488 (Selaginella moellendorffii), 5'ss of exon 20
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgagattttacaaatctctctttcatcttttgcctg--ctgactgcttatttctctgatgatag----------------------------------------------------
||||||||||||||| | ||||| || || |||||||| |||||||| ||||||||||| |||   ||| |||| || ||||| ||||| || || || ||| |||| |||    ||||     |  |   | || ||   |   |    |   ||| | |    ||   |                                                       
AAGAACATTTTTAAGCTTGCACAGGGTGAATACATAGCGCCAGAGAAGATTGAGAATGTCTATCAAAAAAGCAAGTTCGTTGCTCAGTGTTTCGTCTACGgtgagaacaattttgttttgtgtctagcgagtccacctggcgaaaggatcggtcgctgaatagcatggcaaagttttctccctatgtgtgactcggttttgacacaattctcttcgattgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71889597|gb|DT038652.1|DT038652
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|110414986|gb|EC980854.1|EC980854
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|46917646|gb|CN546975.1|CN546975
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATGGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|71882993|gb|DT032048.1|DT032048
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|46917526|gb|CN546855.1|CN546855
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATGGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|46918400|gb|CN547729.1|CN547729
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|71881187|gb|DT030242.1|DT030242
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
EST: gi|71882474|gb|DT031529.1|DT031529
EST:     TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATG                         GTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG
genomic: TGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaa ... ctgatgatagGTGACAGCATGAACTCATCTTTGGTTGCTATAGTGTCAGTGGACCCAGATG