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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAATAAATGATGCTACTTTGAAATCTTTGGATTTTAGAAGGGACTTTCTCTTTCCATTTTCTCTCTTATTGCACAATACAGGACCTGTTGGACGTCAGgtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcag

Basic information

species Vitis vinifera
transcript Vv02s0012g00460.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA11G04290.1 (Glycine max), 5'ss of exon 19
TCTAATAAATGATGCTACTTTGAAATCTTTGGATTTTAGAAGGGACTTTCTCTTTCCATTTTCTCTCTTATTGCACAATACAGGACCTGTTGGACGTCAGgtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcag
 ||| ||||||||||||| || ||||| ||||| ||||||||||||||||| || ||| |||||||  | |||  ||||||  |||||||||| ||||||||| ||| || || |||       |  ||     |||||    ||  | ||| | |   |||           |  | |   |   |   |                                                                                 
CCTAGTAAATGATGCTACCTTAAAATCATTGGACTTTAGAAGGGACTTTCTATTCCCACTTTCTCTACTGTTGTGCAATACTAGACCTGTTGGTCGTCAGgtagttaaattattttt-------aggtgcttcacctctc---cacaactataaattgaacattgtctaatatatgacatctttgtttcag---------------------------------------------------------------------------------

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 19
TCTAATAAATGATGCTACTTTGAAATCTTTGGATTTTAGAAGGGACTTTCTCTTTCCATTTTCTCTCTTATTGCACAATACAGGACCTGTTGGACGTCAGgtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcag
 ||||||||||||||||| || ||||| ||||| ||| ||||||||||| | || ||| |||||||  |||||  ||||||  |||||||||| ||||||||| ||| || || ||   | |||          |  ||  |    ||  ||  | || | || |  | ||        |                                                                                            
CCTAATAAATGATGCTACCTTAAAATCATTGGACTTTCGAAGGGACTTTTTATTCCCACTTTCTCTACTATTGTGCAATACTAGACCTGTTGGTCGTCAGgtagttaaattattttaggtgcttcacctctccacagctatatattgaacattgt-ctaataaatgacatctttgtttcag-------------------------------------------------------------------------------------------

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 5'ss of exon 20
TCTAATAAATGATGCTACTTTGAAATCTTTGGATTTTAGAAGGGACTTTCTCTTTCCATTTTCTCTCTTATTGCACAATACAGGACCTGTTGGACGTCAGgtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaa-aaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcag
 || || |||||   | |  |  |||||||||| | | ||||||| || || ||||||||||||||||||||| |||| ||  |||||||||| ||||||||   || ||  |  | ||| || |    |  | | ||||| |    |||    || |||| | | |  |  ||  |  ||||  |||    |      |  |||                                                                    
CCTCATCAATGAGATTTCACTAGAATCTTTGGAGTATCGAAGGGATTTACTTTTTCCATTTTCTCTCTTATTGAACAACACTCGACCTGTTGGGCGTCAGgt---tacattttaatctctcctaa---ataattcgtcttatg----attt--gtttttactattgtgttaacataagcaaaaacaattcttgtggtttatgcag--------------------------------------------------------------------