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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgtatctatagtttaaatttgtatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgcacgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g03740.t01
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 18
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgtatctatagtttaaatttg-tatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgcacgcag-----------------------------
|||| || || |  || || ||||| ||  | |||||||||||  | || || |||||||||||||| ||||| |||||||||||||||| |||||| |||||  |  |    |||  || |  ||       |      ||| |     |||  ||| |   | || || |||     |||                             
TTCCTTTCTCAAGAATCGTTTACATCGAAAAAACTGATTTTCGTCTAAAGGACTCGAAAGATTACTACGGGCTAGCTCCTGGTAAATCTGCCCTGCTAAGgtaattgaatcagaaaactgctgcttttcgctgagaaagatattatttgacagttgatagttcacttactccatatttacagtaacacggtaattgtctaattaattacag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 18
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgtatc--tatagtttaaatttgta--tttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgcacgcag--------------
||||||| || |  | ||| ||||| |||||  ||||||||||  | || ||||| |||||||| ||||||||||||||||||||| | || || || |||||    || | | || || ||||   |    |  || ||   |     |      |   ||     | |  |  |||   || |              
TTCCATTCTCAAGAACTGTCTACATCGAGCAGTCTGATTTTCGTGTAAAGGATTCAAAAGATTATTATGGGCTTGCTCCTGGTAAAACAGTACTACTAAGgtactagtacattatacatctgtagactctgtacttaattagtttgcttactttgtatactttgtggtctcatctatgtttgccgtctgaaactgatag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 18
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgta-----tctatagtttaaatttgtattt-----ccaatctacttgagta---taagaaagcagaagattgagaattttcttcatgcacgcag
|||| || || |  | ||| ||||||||| | |||||||||||  | || || || ||||| ||||||||||| || ||||||||||||||| |||| |||||     || | |   |  || || || |     ||  |||| |  ||      || |   ||| |   ||      | | |  |      ||
TTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTAAAGGACTCAAAAGACTACTATGGGCTAGCCCCTGGTAAATCTGTCATGCTAAGgtactttttcgagaaggttgatctgaatctagttgcctgtctattgcagctactcaatatgacagtaacatgccgtggtcccttgtattgctag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 17
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgta------tctatagtttaaatttgtattt-----ccaatctacttgagta---taagaaagcagaagattgagaattttcttcatgcacgcag
|||| || || |  | ||| ||||||||| | |||||||||||  | || || || ||||| ||||||||||| || ||||||||||||||| |||| |||||       | | |   |  || || || |     |  ||||| |  ||      || |     | |   ||| |   | | | |       ||
TTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAAGgtacattttccgagaaggttgatctgaatctagttgcttatctattgcagctactcaatatgatggtaacatgacatggtcccttaaattactag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgt--atctatagtttaaatttgtatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgc-acgcag
|||||||||| ||| |||| || ||||| ||  | || || |||||| ||||||| |||||||| ||||| ||||||||||| ||||||||  | |||||||   |  |  ||  |||||  ||||   |||      ||| ||    | |   |  ||| | ||||||| | ||     ||||
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggtacaaattgatattgtgaat------gagaatttataggtccagtattcaaaattttcattattttgtgcag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgt--atctatagtttaaatttgtatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgc-acgcag
|| ||||||| ||| |||| || ||||| ||  | || || |||||| ||||||| |||||||| ||||| ||||||||||| ||||||||  | |||||||   |  |  |   |||||  ||||   | |      ||| ||    | ||  || ||| | ||||||| | ||     ||||
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggcacaaattgatattgtgagt------gagaatttataggcccaatattcaaaattttcattattttgtgcag

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 18
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgtatctata---gtttaaatttg--tatttccaatcta--cttgagtataagaaagcagaagattgagaattttcttcatgcacgcag---
| || || ||||   |||| |||||||| ||  |||| || || ||||| ||||| |||||||| |||||||| || ||||||||||||||  |||| |||||| || |   |   |  |||    ||| | | | |    |||| ||| |   ||  |    |  |     ||| |  ||| |   |   
TACCGTTCTCTAGAGTTGTATACATTGACCAATCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTTTTGCTAAGgtatatagaaagggacagttttcatcattactacttttgctttgaatatgattcagttgtgactaaacgtgcttcctgctgctctttgcag