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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTCGCGCCAATCAAGTGATGATGATGAAAGTGCAAGAGCTGCTGTATTGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacatgccaagttatatggtgcataagaatccatcctttagtttgatgctcagatgcagtatgcttccatagcatgaataccagtgcatacatttttagcatgttcatgaagtgacctttggtcaagcatggcttcaacccacaatgcttcacttctcatggttgtcaatgtatataatgtag

Basic information

species Vitis vinifera
transcript Vv19s0014g02310.t01
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727216|gb|EE103719.1|EE103719
EST:     TGTCATCATCTAAGGCATTATCAATTTTGTTCATTCCTTCATTAAAAGAG                         GCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
genomic: TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacat ... tataatgtagGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
EST: gi|352781733|gb|FQ469031.1|FQ469031
EST:     TGTCATCATTTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAG                         GCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
genomic: TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacat ... tataatgtagGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
EST: gi|352772707|gb|FQ473745.1|FQ473745
EST:     TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAG                         GCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
genomic: TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacat ... tataatgtagGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
EST: gi|110391131|gb|EC956088.1|EC956088
EST:     TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAG                         GCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
genomic: TGTCATCATCTAAGGCATTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacat ... tataatgtagGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
EST: gi|352769490|gb|FQ468418.1|FQ468418
EST:     TTATCAATATTGTTCATTCCTTCATTAAAAGAG                         GCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA
genomic: TTATCAATATTGTTCATTCCTTCATTAAAAGAGgtgagtacat ... tataatgtagGCCGGCCTTGATGATTCAAAAGGGGCAATTGGTCATGCAGTGGCAAATGCA