Sequence
atgc intronic sequence ATGC exonic sequenceTTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatcatgagtttttatctctttctctctggaatcttcttgcgactataaattgcaaatgcaattatgttaagctttttgtatgattttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA09G18840.1 (Glycine max), 5'ss of exon 18
TTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatcatgagtt-tttatctct-ttctctctggaatcttcttgcgactataaat--tgcaaatgcaattatgttaagctttttgtatgattttt
||||||||||||||||| || || ||||||||||||||||| || ||||| || | |||||| |||| || |||||||||| || | | | | | || |||| ||||| ||| | | | || || | |||| || | | | | |||| |
TTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGgtgaaatgaatccttgttttctacttgtctcccttctccaaagaaataggaagttctttttgataatgatagtgcagttgtctgataccttttcagccag----
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 18
TTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatcatgagtt-tttatctctttctctctggaatcttcttgcgactataaat--tgcaaatgcaattatgttaagctttttgtatgattttt
|||||||| |||||||| || || ||||||||||||||||| || ||||| || | |||||| |||| || |||||||||| || | | | | | || || | ||||| ||| | | | | || || | | || || | | | |||| | | |
TTTGTTGACGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGgtgaaatgaatccttgttttctacttgtccccttctccaaagaaatatgaagttctttttgataatgatagtacagttgtctgctaccttttcaaccagt---
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT1G47550.1 (Arabidopsis thaliana), 5'ss of exon 18
TTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatca-----tgagt--ttttatctctttct----ctctggaatcttcttgcgactataaattgcaaatgcaattat--gttaagctttttgtatgattttt------------------------------------
||||| ||||||||||||||||| |||||||||||||||||||| || | |||| |||||| || |||||||||| |||||| | | | || | | | ||| || || | || | | | || | | | | || |||| | || || || | ||| || ||| |
TTTGTGGATGAAGCTTGTCACCAAATTGAAAGAAATGAACGTAATGTAAGACAGATGGGTGTCTTGCCATATATTCCAAGgtaatcagaaattccaccttgtaaataatttcattcaattttgtggttccgaactatttctcccaat-tagattgttggttagatgatcaaagaaaccgtttttagtattgcttgaggctatgctaacattattatatcattttcatag
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 18
TTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatcatgagtttttatctctt-tctctctggaatcttcttgcgactataaattgcaaatg-caattatgttaagctttttgtatgattttt
||||| ||||||||||||||||| ||||||| |||||||||||| || | |||| |||||| || |||||||||| |||||| | | ||| || | | | | | | | | | | || | | | | | | | |||| | ||| ||||
TTTGTGGATGAAGCTTGTCACCAAATTGAAAAAAATGAACGTAATGTAAGACAGATGGGTGTCTTGCCATATATTCCAAGgtaatcaagaagtccatacattgaagtgccatgtgaatacttatttatgtccccaccagttagtacttccgtccaccctgtttataatttcagtcaattt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7593728|gb|AW707979.1|AW707979EST: AGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAG ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAG
genomic: AGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaag ... ttctacatagATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGgtaaactaagctatcatgagtttttatctctttctctctggaatcttcttgcgactataaattgcaaatgcaattatgttaagctttttgtatgattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcaa