Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgcttgaccaatcaattgaggtgaaggta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g40740.4 (Oryza sativa), 5'ss of exon 10
-------------CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacat-tttgctctcttag-ctcttgttcattgtc---ttcaatttgcttgaccaatcaat--tgaggtgaaggta-
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CACACTTTTAAAGCCAGGAGAGTCACTAAAAGATTTCTACAAGAGAACGGATATGTACTGGCAGATGGCTGCATATGAGCACACTCAACACACTGGAAAGgttagtttctgctccttaagtatcttcacccgtcatacctgttatcatattctctaggttgctggcagtatgagtttgctgtatttattcgtgctcatccaatgccag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g40740.1 (Oryza sativa), 5'ss of exon 18
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacat-tttgctctcttag-ctcttgttcattgtct---tcaatttgcttgaccaatcaat--tgaggtgaaggta-
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CCAGGAGAGTCACTAAAAGATTTCTACAAGAGAACGGATATGTACTGGCAGATGGCTGCATATGAGCACACTCAACACACTGGAAAGgttagtttctgctccttaagtatcttcacccgtcatacctgttatcatattctctaggttgctggcagtatgagtttgctgtatttattcgtgctcatccaatgccag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 15
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacattttgctctcttagctcttgttcattgtcttcaatttg--cttgaccaatcaattgaggtgaaggta
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CCTGGAGAATCACTGAGAGATTTCTACAAGAGGACAAATATGTACTGGCAAATGGCTGCCTATGAGCACACTCAACACACTGGAAAGgttagtttccatttctcgaatttccatcattggtcagctagtatatcatccttaataaaacgtgttgcatgtaatcctgtacacccaacggcag--------
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 18
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatat---tagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgcttgaccaatcaattgag-gtgaaggta
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CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgattctcttataacttccctttaatataaattttctaattctctaaattaatcattccattgttat----
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 17
-------------CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacattttgctctcttagctcttgttca-ttgtcttcaatttgcttgaccaatcaattgaggtgaaggta-
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GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctcttttctttctctagttatatg-attctcttataacttcccatgtaaaatcatattatctttggtaatttgatttgtttta-tgaacctag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttca---taagttttaatattagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgct-tgaccaatcaattgaggtgaaggta
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CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110405900|gb|EC971457.1|EC971457EST: TGGCAGCACATGAGCACACTCAACACACTGGAAAG GAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTT
genomic: TGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcat ... ggaactgcagGAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttcataagttttaatattagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgcttgaccaatcaattgaggtgaaggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgaagg