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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGgtaatgcaatgaggtaggatatgtaataagtcagaattgatctagtttctatgttcaatttttcctgtaatgttttagattgagtttaaattctttgttt...

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os09g24440.1 (Oryza sativa), 5'ss of exon 19
GCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGgtaatgcaatgaggtaggatatgtaataagtcagaattgatctagtttctatgttcaatttttcctgtaatgttttagattgagt----ttaaattctttgttt
||| |||||||| |||||  |||| ||||| |||||||||||||||||||  ||||||||||  | || |   |  || |     |       |  | || || |  | ||| || |     ||  ||      |  ||  ||||| 
GCCGAATGACTTCCATGATATTCCGGAGTACTTTGTTCTTGAGgtaatgctttgaggtaggacttatatt---tgtgattacccatgacaagaaaatccatttatgtcagtattgctgacatttccgtagtgccaggttgcttgtt-

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA05G07920.1 (Glycine max), 5'ss of exon 18
GCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGgtaatgcaatgaggtaggatatgtaa--taagtcagaattgatctagtttctatgttcaatttttcctgtaatgttttagattgagtttaaattctttgttt
|||||| || ||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |||||  ||  ||  |  |||| |  ||   |  |     |  |    |    | | |  |||  |||| |||     |  
GCCAAACGATTTTCAAGACTTTGCTGAGTATTTTGTTCTTGAGgtaatgcaaggaggtaggatgtgtaagttagatccaatgtgatgtgattgaaaaatgtttgtgattacatgtgttctgaatttgtctttatatttaaaat--

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G13080.2 (Glycine max), 5'ss of exon 18
GCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGgtaatgcaatgaggtaggatatgtaa--taagtcagaattgatctagtt-tctatgttcaatttttcctgtaatgttttagattgagtttaaattctttgttt
|||||| || |||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||  || |||  |  |||| |  ||   | |||||    |||    | || ||| |||     |||| |  | |  || 
GCCAAACGATTTTCATGACTTTGCCGAGTATTTTGTTCTTGAGgtaatgcaaggaggtaggatgtgtaagttaggtccaatgtgatgtgattacttgtgttctgaatttgtatttatatttaagaaaatatttata--cataatt-