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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGACTGGAAGGAGGTTATGGTGGAAACGAAACCTGGCCCACTTCTAAAGACCCAGTCGGCCCGTTGTATGGACTGTGGTACTCCTTTCTGCCACCAGgtgagcactggtttcatttacattgttatatatttctttatttaaataaaatttcttgcatcttgtttaaatttgaaaaaactgtgcag

Basic information

species Vitis vinifera
transcript Vv16s0098g00290.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA06G13280.2 (Glycine max), 5'ss of exon 18
GAATGACTGGAAGGAGGTTATGGTGGAAACGAAACCTGGCCCACTTCTAAAGACCCAGTCGGCCCGTTGTATGGACTGTGGTACTCCTTTCTGCCACCAGgtgagcactgg---tttcat-----ttacattgttatatatttctttatttaaataaaatttcttgcatc-ttgtttaaatttgaaaaaactgtgcag-------
 ||||||||||| ||||| |||  |||||| || ||||| |||||| | || ||||| || |||||||||||||||||||||||||||||||| || |||||| ||| ||    || |||     || | || ||  ||     |  |||||| |   |||  ||| | | ||||||| | |  | | |  ||   |        
AAATGACTGGAACGAGGTGATGAAGGAAACAAAGCCTGGTCCACTTTTGAAAACCCAATCAGCCCGTTGTATGGACTGTGGTACTCCTTTCTGTCATCAGgtgtgcattgccacttccatgaatttttcctttttggatgacgttgaatttaactttcattatttggacccttgtttagactaaagatacttgataaacttgcag

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 18
GAATGACTGGAAGGAGGTTATGGTGGAAACGAAACCTGGCCCACTTCTAAAGACCCAGTCGGCCCGTTGTATGGACTGTGGTACTCCTTTCTGCCACCAGgtgagcactgg---tttcat------ttacattgttatatatttctttatttaaataaaatttcttgcatc-ttgtttaaatttgaaaaaactgtgcag--------
 ||||||||||| || || |||  |||||| || ||||| |||||| | || ||||| || |||||||| ||||||||||||||||||||||| || |||||| ||| ||    || |||      || | || ||  ||        |||| | |   |||  ||| | | ||||||| | |  | | |  |    |         
AAATGACTGGAATGAAGTGATGAAGGAAACAAAGCCTGGTCCACTTTTGAAAACCCAATCAGCCCGTTGCATGGACTGTGGTACTCCTTTCTGTCATCAGgtgtgcattgccacttccatgaacttttcctttttttgatgacgtcgaatttcactttcattatttgaacccttgtttagactaaagatacttaaataaacttgcag

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 14
GAATGACTGGAAGGAGGTTATGGTGGAAACGAAACCTGGCCCACTTCTAAAGACCCAGTCGGCCCGTTGTATGGACTGTGGTACTCCTTTCTGCCACCAGgtgagcactgg-----------tttcatttaca--ttgttatatatttctttatttaaataaaatttcttgcatcttgtttaaatttgaaaaaactgtgcag--------
|| ||| |||||||| || |||| ||| || || ||||| || ||| | || || ||||| || ||||||||||||||||||||||||||||| || |||||| ||  |             ||||||||  |  ||   |  ||  ||||   || |||     ||    |||    |||||| |  | | |  ||   |         
GACTGATTGGAAGGAAGTGATGGAGGAGACAAAGCCTGGTCCCCTTTTGAAAACACAGTCAGCGCGTTGTATGGACTGTGGTACTCCTTTCTGTCATCAGgtgtgcttttccacttccaacttttcatttttaatttacaacttacatcttcccttcaatggttatttggacatgc-atttaaactgaagatatttgcataaaatttcag