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ACAGACAGAGGGGTCATCGATTGTGGACAAGCTTCGACAGGAACTCAGAGAATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgcccacttactatttttatgttatgggctgacaagcctgaaatgcaaactttgattggtagtgcttggtgctttctagaccatagttactttgg...
species | Vitis vinifera |
transcript | Vv15s0021g02140.t01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GGTATATGCCATGAGAGGCCAAAAGAG GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAEST: gi|71889516|gb|DT038571.1|DT038571
genomic: GGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: GTATATGCCATGAGAGGCCAAAAGAG GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAEST: gi|110395381|gb|EC961043.1|EC961043
genomic: GTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAG GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAEST: gi|349827931|gb|FQ422799.1|FQ422799
genomic: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAG GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGAEST: gi|71885062|gb|DT034117.1|DT034117
genomic: AATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
EST: GGTATATGCCATGAGAGGCCAAAAGAG GTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
genomic: GGTATATGCCATGAGAGGCCAAAAGAGgtgagtgccc ... ggttcttcagGTTGTCATCACAAAATGCTATCACTTATTCTGCAATCCCTGTGTGCAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGACAGAGGGGTCATCGATTGTGGACAAGCTTCGACAGGAACTCAGAGAATACAGGGATATACTGAAGTGCGGTATATGCCATGAGAGGCCAAAAGAGgtgagtgcccacttactatttttatgttatgggctgacaagcctgaaatgcaaactttgattggtagtgcttggtgctttctagaccatagttactttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcaa