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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagttctctctcacaatcattataattggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaaatcctttaacaattgatcccttgcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00180.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 18
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagttctctctca--caatcattataattggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaa--atcctttaacaattgatcccttgcag--------
|| |||||||||||||| ||||| |||||||||||||| ||  |||||||||| ||||| |||   ||||| |||||       || ||      ||  | | || |     | || | |  |||      | || | ||  |   |  |    | ||  |    |||| ||  |   || |  |         
GTCAAAAACCCATGGCCTAATGTTGATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttacctgtcctggttaaataatttagtaaccaaatt-taatcttgaacccatgatggaatagtaaatgtacttcagaacgagtacttaataaaagcggccatctaattacgcag

upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 17
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaa---gagttctc--tctcacaatcattataattg-gagatttcttaatttggctatttaatagta-tcttgggtagatggtaaaaatcctttaacaattg----atc--ccttgcag
|| || ||||||||||||||||| || |||||||||||  ||||||||||||| |||||  ||   ||| |||||||     | | |     | |    | || |  | |   |   ||| ||  |||  || |  ||   || |  ||  |        |  |  |  | |    ||    | |  |  |||||
GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAACCACTTTGGACTATCTGAAACACGgtatgtttgtgcttgtagtttagataccaattcagtcatgtttttttttttttttactttgcaaagctagttctgaatgagcacagagcactcactcatgtctgggacaccaactgtgcag

upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G063851_T05 (Zea mays), 5'ss of exon 4
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagttctctctcacaatc-attataattggagatttcttaatttggctatttaatagtatcttgggtaga--tggtaaaaatcctttaacaattgatcccttgcag
|| || ||||||||||| ||||| |||||||||||||| || ||||||||||| |||||  ||   |||||||||||    |||    ||    ||  | | ||  | |  ||||  |  | |   || |||  |  |||| |    ||    | |  |||  ||  |  | | |  |  |||||
GTCAAGAACCCATGGCCAAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtat---gtttatgcttgtgatttagtctagatagcaatttagtcctctttttacttagcaa-atctagttctgagtgagcactaatgtttggaacactaa--ctgtgcag

upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 19
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaaga-gttctctctcacaatcattataatt-ggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaaatcctttaacaattgatcccttgcag
|| || ||||| ||||| ||||| |||||||||||||| || ||||||||||| |||||  ||   |||||||||||      | || | |||     |||  ||||  | ||| | || ||||   || | ||||   |  ||  |      | |     ||  |||| |     |  |||||
GTCAAGAACCCGTGGCCGAATGTTGATGCTCACAGTGGAGTTTTGCTGAACCACTTTGGACTATCTGAAGCACGgtatgtttatgctttgtcatttagattccaatttagtgatgtttttatttacttagtaaataaagttctgaatgagcactcatg--tctggaacactaa---ctgtgcag

upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 18
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagttctctctcacaatcattataattggagatttcttaatttggctatttaatagtatcttgggtagatggtaaaaatcctttaacaat-tgatcccttgcag
|||||||| |||||||| ||||| |||||||||||||| ||  | |||||| ||| |||| ||   || | |  |||  | |||   |||| || |  ||  | ||| |    | || |||| || |||   |  ||   ||  |  |   |||  |||  |||| | | ||  |        
GTTAAAAATCCATGGCCTAATGTTGATGCTCACAGTGGAGTGCTACTGAACTATTATGGTCTAACTGAGGAAAAgtatggggttacttctctcacttgttccacttgaaatagttttcattttgcaattattttttagggtgaatctaatctaatgatctattaatattgtggacag------

upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 5'ss of exon 18
GTTAAAAACCCATGGCCCAATGTCGATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagttctctctcacaatcattataattggagatttcttaatttggctatttaatagtatct-tgggtagatggtaaaaatcctttaacaattgatcccttgcag
|| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| | |||| ||  ||||||| |||||  |||   | |   |    | ||| ||||       ||||   | ||  |  ||||  || | || |    |  ||                             
GTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAGgtaagaagtagacacctccttcaagtatcattgag----ccttaggatagcactcaaatataatatctgtgcgttttatag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319605|gb|CF372359.1|CF372359
EST:     TGGGGTCTTGCTGATCCATTTTGGTTTACTCGAAGCACG                         ATATTTTGCTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: TGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110391493|gb|EC956472.1|EC956472
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110418511|gb|EC984670.1|EC984670
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110361418|gb|EC924886.1|EC924886
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110429398|gb|EC995889.1|EC995889
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110367719|gb|EC931670.1|EC931670
EST:     TTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: TTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34320089|gb|CF372843.1|CF372843
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34363396|gb|CF404981.1|CF404981
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|34415969|gb|CF414723.1|CF414723
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|29785895|gb|CB343236.2|CB343236
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCGAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|71866113|gb|DT015168.1|DT015168
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110372355|gb|EC936513.1|EC936513
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|71866222|gb|DT015277.1|DT015277
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|110362967|gb|EC926531.1|EC926531
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
EST: gi|77577886|gb|DV217693.1|DV217693
EST:     GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACG                         ATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA
genomic: GATGCTCACAGTGGGGTCTTGCTGAACCATTTTGGTTTACACGAAGCACGgtaaagagtt ... tcccttgcagATATTTTACTGTTCTTTTCGGGGTATCAAGGAGTATAGGGATCTGCTCTCA