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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCATCAGTACGAGGAAGTCAAGGTCAAGCACCCCATTCAGTGCGAGCAAGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAGgtactcttgtggctgttctcttttattggtatgtttagtcaaccatattgaggttatgcatgtatttgagcttcccagccacatgctgcctcatgtgaaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g05000.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os02g25580.2 (Oryza sativa), 5'ss of exon 14
CTGCATCAGTACGAGGAAGTCAAGGTCAAGCACCCCATTCAGTGCGAGCAAGACGGTC------CACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAGgtactcttgtggctgttctcttttattggtatgtttagtcaaccatattgaggttatgcatgtatttgagcttcccagccacatgctgcctcatgtgaaa---
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-----TCAGAACTAGCCCAGCTCA-CCAACCAGCTCATTCTATGAGATCCAGACGGACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgt-cagtggtagagactcttcgttgtctgtgttttgtgttcccgagatagtcgttatcgataagggaaaacgtgtta--cgcatgtcgattcatggatagggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299355|gb|CB976149.1|CB976149
EST:     AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAG                         TGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG
genomic: AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAGgtactcttgt ... ttttttttagTGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG
EST: gi|349823502|gb|FQ414912.1|FQ414912
EST:     AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAG                         TGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG
genomic: AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAGgtactcttgt ... ttttttttagTGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG
EST: gi|110702370|gb|EE081006.1|EE081006
EST:     AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAG                         TGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG
genomic: AGACGGTCCACATGGGCTCGGCCTCGGGGCTCTGATGATGGTTATTCAAGgtactcttgt ... ttttttttagTGATTCAATACTGAGACATGCATCCAGTGATTTCAAGAAAATGGGCCAGCG