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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag

Basic information

species Vitis vinifera
transcript Vv13s0019g02360.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 17
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag
||||||||| ||||| ||||| || || ||||| | ||||||||||||||||||| | || || ||||||   ||||| |   || |    |  || ||  |   | |  |||  |  ||||     ||   | || | |                  
TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTTGGATTGGGTGCTGAGgtac--ttcaaattttacatgccatttacctttctttct-taattgctgaacttattg--gaatatcttgaatag----------------

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G375504_T02 (Zea mays), 5'ss of exon 17
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggac------atta-atccatgtggttgaggtccttacccctgatggtt-ttcatttttcttaatgctgaatag----------------------
||||||||| ||||| ||||| || ||| |||| | ||||||||||||||||||| | || ||||||||| |    |  |     ||  || |||       |||| |||    ||  | | ||  |     ||| || |  || | | ||||||       ||                        
TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTTTGGATTGGGTGCCGAGgtacgccctatctttggagtaaatgggattatttgattacatcggcatgcattatgttatcttttctggtgatcatttactgttcttatcttcatatttctaccttgaatatcttgagtag

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G061777_T04 (Zea mays), 5'ss of exon 1
---------------------------------TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaa-ttaccacgtt-tattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag---------------------------------------------
                                 ||||||||| ||||| ||||| |||||| |||| | ||| ||||||||||||||| | || || |||||| ||   |  ||   |  |   ||| ||    | ||  ||     ||    |||  |     |   |||  ||| ||||    |   || |                                             
CACTGATGGTATATTTTTCTACAATTGCAACAGTGCTGCTGTGTTTCATAATGCAAGCACACGATTCTCTGACGGGGCTCGTTTTGGATTGGGTGCTGAGgtaggtcctatctttttatatggcatttgagtgaactctttggaaaagaatgtcttggcataagttacttttttttatcttttctcatgattgtttaccgttatcttcatatttctacctttgaaatatcttaaatag

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G061777_T01 (Zea mays), 5'ss of exon 3
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaa-ttaccacgtt-tattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag---------------------------------------------
||||||||| ||||| ||||| |||||| |||| | ||| ||||||||||||||| | || || |||||| ||   |  ||   |  |   ||| ||    | ||  ||     ||    |||  |     |   |||  ||| ||||    |   || |                                             
TGCTGCTGTGTTTCATAATGCAAGCACACGATTCTCTGACGGGGCTCGTTTTGGATTGGGTGCTGAGgtaggtcctatctttttatatggcatttgagtgaactctttggaaaagaatgtcttggcataagttacttttttttatcttttctcatgattgtttaccgttatcttcatatttctacctttgaaatatcttaaatag

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 18
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgta--tgtttcaattacc-acgtttattggacattaatccatgtggttgaggtccttacccctga----tggttttcatttttcttaatgctgaatag--
||| ||||| ||||| ||||| |||||||| |||||||||||| | |||||||| || || || ||||||  |  ||     | |    |||| |    ||  ||  || |  |  |     |||  | | |    ||    |||||| | | ||  ||        
TGCCGCTGTGTTTCATAATGCAAGCACAAGGTTTTGTGATGGGACGCGTTTTGGGCTAGGTGCTGAGgtactttctttggccatctgtttttaattcttatcgatttatatcatgaaaacagttaggctttacatgtgaagatcatttatttgaactctttgcgcgc

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 15
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag
||||||||| ||||||||||| ||||| |||||| |||||||||| || |||||||| || || |||||||  |     |  ||  ||||||    || |||| ||    || ||||  ||        |  | |  | ||  |||   | |||||||
TGCTGCTGTTTTTCACAATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatattggttgcat-tttatt----atcaatctattgcattaaggttgttgatt----tattatgtaattcccttctggttgaatag

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 18
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtg-gttgaggtccttacccc---tgatggttttcatttttcttaatgctgaatag
||||||||| || ||||||||||| ||||||||  |||||||||| || |||||||| || || |||||||| |  | |    || ||  ||  | | | || |   |  | | | ||| ||        | ||  || |||| |   |   |  |  ||||
TGCTGCTGTTTTCCACAATGCTAGTACAAGATTCAGTGATGGGGCACGATTTGGACTAGGTGCAGAGgtatgat--attctttacattcttttaataatcattctcttatgctaaagtcattgatttaattcataattctcatgtcattggctttt--atag

upper sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA02G41850.1 (Glycine max), 5'ss of exon 15
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag
||||||||| ||||||||||| ||||| |||||  ||||||||||  | |||||||| || || |||||||  |    ||  ||  |||||| |  || |||| ||    || ||||  ||        |  | |  | ||  |||   | |||||||
TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatattgtttgcat-tttatttgtaatcaatctattgcattaaggttgttgatt----tattatgtaattcccttctggttgaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364352|gb|EC923948.1|EC923948
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|29783366|gb|CB349487.2|CB349487
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|30297817|gb|CB974611.1|CB974611
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110427351|gb|EC993787.1|EC993787
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GATGGAATAAGTACAAGTAGGATTCATG
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATG
EST: gi|33402185|gb|CF207812.1|CF207812
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|33402196|gb|CF207823.1|CF207823
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110377214|gb|EC942273.1|EC942273
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTAGGAATAAGTACAAGTAGGATTCATG
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATG
EST: gi|110365796|gb|EC929255.1|EC929255
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|33402539|gb|CF208166.1|CF208166
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|32461077|gb|CD802251.1|CD802251
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110362804|gb|EC926359.1|EC926359
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110382148|gb|EC938618.1|EC938618
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|27585130|gb|CB007825.1|CB007825
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110375487|gb|EC940476.1|EC940476
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATG
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATG
EST: gi|110420384|gb|EC986656.1|EC986656
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110388887|gb|EC953685.1|EC953685
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|33402105|gb|CF207732.1|CF207732
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|29783302|gb|CB349405.2|CB349405
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110414936|gb|EC980800.1|EC980800
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATGCTCGAGGTCCAGTCGGAGTTGAA
EST: gi|110421820|gb|EC988122.1|EC988122
EST:     ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAG                         GTTGGAATAAGTACAAGTAGGATTCATG
genomic: ATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttca ... tgctgaatagGTTGGAATAAGTACAAGTAGGATTCATG