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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaatgcaattggaagctatttgatgcaaatcagtaactaaaatgttgatccactttcatactggtactgagactaaattttacacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00590.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os05g16824.3 (Oryza sativa), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaatgcaattggaagctatttgatgcaaatcagtaactaaaatgttgatccactttcatactggtactgagactaaattttacacag
| |||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||||    || |||||  | || |||||| | ||    || ||| ||||       | |   |||||   |   |   | |||||  ||  |  |    | | ||        | | || |  || | ||   
TTCATTGAGATCCATCTCTTTTGGGCTGGCAAAGGCACTTGTTGTGTACCTACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaa-------gcacaatatttttagttgact-gcaactaggattatattggcttcttatgtg-----taaaaccattttcttcag--

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os05g16930.1 (Oryza sativa), 5'ss of exon 16
------------------------------------------------------------------------TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaa-tgcaattggaa-gctatttgatgcaaatcagtaactaaaatgttgatccactttcatactggtactgagactaaattttacacag
                                                                        | | |||| || ||||||||||||||||| || || ||||| ||||||||| |||||||    ||||| ||    || |||||| | ||||  || ||| ||||  ||||     | | ||| |    |||   | ||  |  |||  | ||    |    |  |  ||| |                  
ATAAGGAAGATGGCGGGTGGAAAATCTTTTACTGCAGTCAACAGAAGTTATACTGCAAGAGTGTCCAAAAATTTCCTTGAGATTCATCTCTTTTGGGCTGgtaagggaacttgttgtgtacctactcaaggttactatgggccgatgatctcagcattaagtgtcacaccaagtaagcgcaaccattatgttatcttcaacaagg-attatatggaat-ctaataagatcatttttttatacag------------------

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaatgc-----aattggaagct--------atttgatgcaaatcagta-actaaaatgttgatccactttcatactggtactgagactaaattttacacag
||  | || |||||||||||||||||||||||||||||||| ||| |||| | |||||| || ||||| ||    |||||||| || ||||||| |||||||||  |     |     | |||        ||||| | ||||    ||    ||||||||| |     ||  | ||  |  ||  | | | | |   |   
TATCTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGTTGTATACCAGTTCAAGGTACTTATGGGCCCCTGATTTCAGCCATTAGTGCTATCCCAGgtaaaacttaaaagagacaggcttttcatatatttggtccaaacacatacgtgaaaatgttgttttttatttttcctatttttgctagtcattatagtaa--

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA08G25600.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaatgcaattggaagctatt--tgatgcaaat---cagtaactaaaatgttgatccac----tttcatactggtactgagactaaattttacacag-----------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||  ||||  ||||||| || ||||| || |  |||  |||||||  ||||| |||||||||| | ||   ||    ||  | ||  | ||    | | |||||  | |   |   |    |  | ||   |          ||| |||| | |                                    
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATCCCAGgtaatactatgaaaaaaatttggtaatttagatgtttaattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatatttttaatttgataaattgttttgtgttgtacag

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 20
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGgtaatgcaattggaagctatt--tgatgcaaat---cagtaactaaaatgttgatccac----tttcatactggtactgagactaaattttacacag-----------------------------------
||  |||| || ||||||||||||||||||||||| ||||| ||  ||||  ||||||| || ||||| || |  |||  |||||||  |||||  ||||||||| | || | ||   |||  | ||  | ||    | | |||||  | |   |   |    |  | ||   |          ||| |||| | |                                    
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATTCCAGgtaatactat-gaaaaaaattggtaatttagatgtttaattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatttttttaatttgatacattgttttgtgttgtacag