Sequence
atgc intronic sequence ATGC exonic sequenceGCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaaccttctttccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatgtcacctgaagaagtgtgcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 5'ss of exon 18
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaaccttctttccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatg--tcacctgaagaagtgtgcctt------------------------
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GCATGACTCGTTTTGGGTGCATGCATGTGATGTTGATAAAATGAATCAGATACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgc---taacaggcactattcact-caacagtgtcttcattctacacttcactttaaactctacatgtgaggattacttcccctaacaatttatttcttttcaatttgaatgtttcttttcag
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaacc-ttctttccctatattaatgtgagagc-ctgta-aatttagaatttcttttggatgtgttgaatgtcacctgaa-gaagtgtgcctt---------------
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TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgtatgc-cactggaacaattgtcttcaactcttaaagttacttcattctacaactgagcaataatcgccaatgcttaatgttttatttatatgcattttgcatatctttggtgattcag
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G07940.1 (Glycine max), 5'ss of exon 18
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaaccttctt----tccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatgtc--acctgaagaagtgtgcctt----------------------------------------------------------------------------------
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TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggcttattttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA06G24890.1 (Glycine max), 5'ss of exon 11
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtg--tattgcaaccttctttccctatattaatgt---gagagcctgtaaatttagaatttcttttggatgtgttgaatgtcacctgaagaagtgtgcctt
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TCATGATTCGTTTTGGACACACCCATGCGATGTTGAGAAAATGAATCAGATTCTAAGAGAAAAATTTGTGGAGCTTTATAACATGCCTATACTTGAAAATgtaagttcttgctgtggcctgagaaatgtatacttatattctaggaacatggaga---aaaattaatattttccgtctc-actgtcaaatatatgcaagttcat-
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA04G24350.1 (Glycine max), 5'ss of exon 13
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtg--tattgcaaccttctttccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatgtcacctgaagaagtgtgcctt----
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TCATGATTCGTTTTGGACACACCCATGCGATGTTGAGAAAATGAATCAGATTCTAAGGGAAAAATTTGTGGAGCTTTATAACATGCCTATACTTGAAAATgtgagttcttgctgtggcctgagaaatatatgcttatcttctagga-gtacatggagaaaaaatt---aatatttttcatctcact--atccattgacctttatcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690342|gb|EC951269.1|EC951269EST: AAAA-TTGTAGAGCTTTACAGTATGCCAATAC-TGAAAAT TTGCTGGAAAGTTTCCAGACATCACATCCAACATTGACATTTCCACCGCTT
genomic: AAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtat ... tgattcccagTTGCTGGAAAGTTTCCAGACATCACATCCAACATTGACATTTCCACCGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaaccttctttccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatgtcacctgaagaagtgtgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag