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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGgtaatattttcttacttataattttatttagattatgtcttgatggttgagcttgatccgttgatcaaacaatctccactctagaatagcaatacggttgttacaagcatgaagttcctattgtag

Basic information

species Vitis vinifera
transcript Vv11s0016g04620.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 18
GTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGgtaatattttcttacttataattttatttagattatgtcttgatggttgagcttgatccgttgatcaaacaatctccactctagaatagcaatacggttgttacaagcatgaagttcctattgtag
|| ||||||||| | || ||||||||||| |||||||||||||| |||| ||| ||  |||||| ||  |||||||||| ||||||||| ||||||||||||||  |||| |  ||| |    |    |||| | |||  |  |   |    |       |  ||     |   || |     | |||   || |  ||   |                       
GTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGgtaaggttttttggcttctgccatctgctagactttgtgcttgtcactattttaaggatatccatgtgcaagagtctaa---ggcatatgtattcaattagga-----------------------

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 18
GTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGgtaatattttctta-cttataattttatttagattatgtcttgatggttgagcttgatccgttgatcaaacaatctccactctagaatagcaatacggttgttacaagcatgaagttcctattgtag
|| ||||||||||| || ||||| || || ||||||||||||||  ||| ||| ||  | |||| ||  |||||||||| ||||||||| ||||||||||||| | |||| ||| ||| |    || | ||   |  ||    ||     | |        |   | |||  ||||       |  ||  | | |  | |                           
GTAACATTTGTTGTGGTTCAAAAGCGACATCACACTAGACTCTTCTCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGgtattttttttttaacttctgtcattttctatcattagtgcatatcaccaaccaaaggatatctgtgaaa--atctaagaggaaatatgcctagatagcttg-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407837|gb|CF213464.1|CF213464
EST:     CAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTG                         GTACTGTGGTCGATTCTAAGATCTGCCATCCCAGTGAGTTTGACTTTTATC
genomic: CAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGgtaatatttt ... cctattgtagGTACTGTGGTCGATTCGAAGATCTGCCATCCCAGTGAGTTTGACTTTTATC