1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtgttgcatgatcactccactcttctcctgcgtatcctctattctgatctcatagaatgtacaaaattgccacatgcag
species | Vitis vinifera |
transcript | Vv11s0016g03230.t01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAG TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGAEST: gi|33404538|gb|CF210165.1|CF210165
genomic: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtg ... ccacatgcagTTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
EST: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAG TTGCAGAAGGCTGCAAAACTTTTAGATTCGGGGGCTGTCAGAGCCACAAGAEST: gi|110364327|gb|EC923886.1|EC923886
genomic: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtg ... ccacatgcagTTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
EST: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAG TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGAEST: gi|110362696|gb|EC926245.1|EC926245
genomic: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtg ... ccacatgcagTTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
EST: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAG TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGAEST: gi|30299403|gb|CB976197.1|CB976197
genomic: GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtg ... ccacatgcagTTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
EST: CATATGGCTGCAGCAAGCATACAG TTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
genomic: CATATGGCTGCAGCAAGCATACAGgtatcttgtg ... ccacatgcagTTGCAGAAGGCTGCAAAACTTTTAGATTCAGGGGCTGTCAGAGCCACAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCTTCCCTTGCATCACCGCCATATGGCTGCAGCAAGCATACAGgtatcttgtgttgcatgatcactccactcttctcctgcgtatcctctattctgatctcatagaatgtacaaaattgccacatgcag
- - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - AGCAAG