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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTAAAACTTGGTACCCCCCACTGGAGAAAACCTTGTCTTGCCTGTCGAAGTTGTATCGTTGTCTGGAACCAGCAGTTTTCACTGGTTTAGCCCAGgtatttgagtgtttgtgcaatcactgttcttcaacttcttggcttgtgaataaatatattttttgcctttaccctttttttgatgctcagctgcttcttttatccatctatatcag

Basic information

species Vitis vinifera
transcript Vv11s0016g00350.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 17
TGTATTTAAAACTTGGTACCCCCCACTGGAGAAAACCTTGTCTTGCCTGTCGAAGTTGTATCGTTGTCTGGAACCAGCAGTTTTCACTGGTTTAGCCCAGgtatttgagtgtttgtgcaatcactgttcttcaacttcttggcttgtgaataaatatattttttgcctttaccctttttttgatgctcagctgcttcttttatccatctatatcag
| |||||||||| ||||| || || |||||||||||  | || || || || ||||||||||||||| | ||  | ||||||||||| |||||||| |||||||| ||| ||||      | ||| || ||  ||  |    | ||        ||| | | || | || |   |||| || |   || |||  || || | || |||        
TATATTTAAAACATGGTATCCACCCCTGGAGAAAACTCTATCATGTCTTTCAAAGTTGTATCGTTGTTTAGAGTCTGCAGTTTTCACGGGTTTAGCACAGgtattagag-gtttcacttttaactattttt--acccccccacctg-------gtat-tctcttcctttgaatattttattaacaatcggct-tttgttatttcaatcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701225|gb|EE078568.1|EE078568
EST:     CAGTTTTCACTGGTTTAGCCCAG                         GAGGCAGTGGAAGTTTGCTCGCTATCTATCCAA
genomic: CAGTTTTCACTGGTTTAGCCCAGgtatttgagt ... tctatatcagGAGGCAGTGGAAGTTTGCTCGCTATCTATCCAA