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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTCGAAATTCATCTGTTTTGGGCTGGTAAGGGAACTTGCTGCATACCAGTCCAAGGTTATTACGGGCCATCCATTTCAGCCCTGAGTGTTGTTTCTGgtaataactcgaacgatattctatgcatttcatttaacacaacaagttctaaatggtgctaagtttccaaatcacagttgatcactgatttactttgctcag

Basic information

species Vitis vinifera
transcript Vv10s0092g00590.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0092g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os05g16930.1 (Oryza sativa), 5'ss of exon 16
------------------------------------------------------------------------TATCTCGAAATTCATCTGTTTTGGGCTGGTAAGGGAACTTGCTGCATACCAGTCCAAGGTTATTACGGGCCATCCATTTCAGCCCTGAGTGTTGTTTCTGgtaataactcgaacgatattctatgcatttcatttaacacaacaagttctaaatggtgctaagtttccaaatcacagttgatcactgatttactttgctcag
                                                                        |  || || |||||||| ||||||||||||||||||||||| ||  ||||    |||||||| || |||||    || |||||  | |||||     |  ||||   | | | |  |||  |||      ||   |  | |   | |    |||      |  |||  | |                               
ATAAGGAAGATGGCGGGTGGAAAATCTTTTACTGCAGTCAACAGAAGTTATACTGCAAGAGTGTCCAAAAATTTCCTTGAGATTCATCTCTTTTGGGCTGgtaagggaacttgttgtgtacctactcaaggttactatgggccgatgatctcagcattaagtgtcacaccaagtaa--gcgcaaccattatgttatcttcaacaaggattatatggaatct--aataagatcatttttttatacag----------------------------

upper sequence: Vv10s0092g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g52640.2 (Oryza sativa), 5'ss of exon 17
TATCTCGAAATTCATCTGTTTTGGGCTGGTAAGGGAACTTGCTGCATACCAGTCCAAGGTTATTACGGGCCATCCATTTCAGCCCTGAGTGTTGTTTCTGgtaataactcgaacgatattctat-gcatttcatttaacacaacaa-gttctaaatggtgctaagt-ttccaaatcacagtt-gatcactgatttactttgctcag------------------
|   | || |||||||| || |||||||| ||||||||||||||||| ||    ||||| || || |||||  | || ||||| |||||| |     |  ||| |  |   ||| | |    ||     |||   ||  | ||| | ||  |   | | | ||| | || ||   ||  ||  |||  |   |||  ||    |||                  
TTCGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGAACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTTTAAGCCCAAgtattccccttaactacaaatcatcatggttccagtatgaaaacgatgtattttctagggttaactgttgcattccattgtaagattgcatttttttttctaacaggtgaactttttttgttag

upper sequence: Vv10s0092g00590.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 16
TATCTCGAAATTCATCTGTTTTGGGCTGGTAAGGGAACTTGCTGCATACCAGTCCAAGGTTATTACGGGCCATCCATTTCAGCCCTGAGTGTTGTTTCTGgtaataactcgaacgatattctatgcatttcatttaacaca-acaagttctaaatggtgctaagtttccaaat-cacagtt--gatcact-gatttactttgctcag----------------------------------------------------------------------------------------------
   || ||||||||||| ||||||||||| ||||| ||||| ||||| ||    |||||  |||| |||||  | || |||||  ||||||    |    ||| |  ||      | | || |||  ||| || |    || | ||  ||   | | |    | ||||   ||  ||| ||   | |||  ||  ||||     |                                                                                                
ATCCTAGAAATTCATCTCTTTTGGGCTGGAAAGGGCACTTGTTGCATCCCTAATCAAGGCGATTATGGGCCTACAATATCAGCTTTGAGTGCAACTCTAAgtattctcttttgatacaatc-atggctttaatattgttcagataatgtccttacgttcaacaatttcattatatacaatttctaccacgagaagtactgaagactaaaaagactggaattttagaaatgcctaacataaaagccaaatattgtttatattgatgtataatcatgctttctaacaaatgcctctcctacag