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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc...

Basic information

species Vitis vinifera
transcript Vv09s0018g02130.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 17
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgt------ctgttgtaaatttttggaccttt--ctttttgctgaact----accttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc-----
||  | ||||| || || |||||||||||||| || || |||||||||||||| || ||||| |||||  | || |||||| ||||      ||||||| |  || |  |  ||   |  || | || |            | ||  | | | ||  ||   |    | || ||   |||  | |   | | |        
GTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAGgttgggtgctgttgtcatattctcaatgttgtgcacttcggtggatacaaagatgatccatgattccagaaatttgctcagccacgacttat-tccctatttcttgtcaattttaag

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM5G892495_T02 (Zea mays), 5'ss of exon 7
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgta--aatttt----tggacctt-tctttttgctgaactacct--tccaattttcctaaaagcttaagcttttaagat--ttgggtccacaatgtatatgatgc-----
|| || |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||| |||||||| || ||  ||||  |||||    |||||    ||| |||| |  || | ||  | ||  |  | | || |    ||  || |  | ||||  |||  || |  ||   |  | | || ||      
GTTCGGAGGCTTTCTGCCTGTGAAACAATGGGTTCAGCGACAACTATTTGTAGTGACAAGACTGGTACATTAACATTAAACCAGgttagttgtttttattttgaaatggtccttgtaattattctttattagttggtactatctagtaaattgcctctggttttgtgattgtttgaccccggaactttttgttgttcaag

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 19
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacct--ttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc
|| ||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||   |||  |   | |  | | |      | | |  | | |     | |   ||  |||    | |  ||  |||         || || | | |||  | |
GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggcaataccc-cattttttatc-tac

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 19
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc--
|| ||  |||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||   |||  |   | || | | |      |    ||   |  |     | |   | | |   ||     |||  |   ||    ||   || | ||||    
GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatcttaggcttggacaatc-tagagggaattatggctataatttataatctataacattagtaaa-ggcaataccccgtttttgatctac

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA15G00340.1 (Glycine max), 5'ss of exon 18
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagc-ttttaagatttgggtccacaatgtatatgatgc-
||||| ||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||  ||| |   |     ||   ||   |   |  |   |   |       |  |  |   ||| || | | || |   |   |||  |  ||| | ||   
GTGCGAAGGCTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGgtgggttctg--tggccagagggttggatagtccaagagaagctatggccataatttacatttatgcatatgaataaaagctcccaagagttatctaattga

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA13G44990.1 (Glycine max), 5'ss of exon 18
----------------GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacct---ttctttttgctgaactaccttc-caattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc-
                ||| | ||||| || || || ||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||  ||| |         |   |   |  |    |  || |||    |  ||||| | |  | || || |  |  ||| |      |||  |  ||| | ||   
TCTAACTTTTGTGCAGGTGAGAAGGCTGTCCGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACAGGAACTTTGACCTTAAATCAGgtgggttctgtggccagagggttggatagtccaagaggagctatggccataatttacatttatgcatatgaataaaagctc-----ccaagagttatctaattga

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 16
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgt-tgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc
||  | ||||||||||| |||||||| ||||| || ||||||||||| |||||||| || |||||||| ||||| |||||| ||||  || |  |      ||     |||||       ||  ||| ||  |   | ||| |    |||  ||               |||             
GTTAGAAGGCTTTCAGCTTGTGAAACCATGGGATCAGCAACAACAATCTGCAGTGACAAAACTGGAACTTTAACTTTGAATCAGgttagtatccagtaaaatgtgagcttcttgacatgaaa--accatcatacccttctagatagctaactttacccctcacaaaaatacag------------

upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: EFJ25508 (Selaginella moellendorffii), 5'ss of exon 15
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc
|| |||    |  | ||||| ||||| ||||| |||||||| || || |||||||||||||| |||||  | ||||||||  |||| || |    ||    |||   || |  | | |||  |||||| ||                                                     
GTCCGTCATTTGGCTGCCTGCGAAACAATGGGATCTGCAACGACTATCTGCAGTGATAAGACCGGAACCCTGACCTTGAACCAGgtatgattgttatgacgggaaagttatggt-gttgacttaccttgcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864361|gb|DT013416.1|DT013416
EST:     CTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAG                         ATGACTGTGGTTGAGGCTTATGTAGGGAGAAAGAAGATAGATCCACCAGAT
genomic: CTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgta ... ttcatgacagATGACTGTGGTTGAGGCTTATGTAGGGAGAAAGAAGATAGATCCACCAGAT