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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGCAATGATGGTTCTCTCAAAGGGCCAGCTACATACATTGTGCAAGGCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctctccttttgggagcagtaagttccttggatgttaatttcaactctttactccattccctttgaaaatacaatgtcacaacttcttaatattcatggattatcattttttcatgttcatctccttttacatttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g00840.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00840.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA07G04680.1 (Glycine max), 5'ss of exon 19
TTCAAGCAATGATGGTTCTCTCAAAGGGCCAGCTACATACATTGTGCAAGGCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctctccttttgggagcagtaagttc-cttggatgttaatttcaactctttactccattccctttgaaaatacaatgtcacaacttcttaatattcatggattatcattttttcatgttcatctccttttacatttgcag
|||   ||| |||||| |  |  |  | || || |||||||||||| |||| |||||||||||||||||||| |||||| |   |||||| || ||||| |||||||    |   ||| ||    | |||  | |   |||   |   ||||  | |    | |    | |||      ||   | |  || | |||     |  ||                                      
TTCTGACAAAGATGGTACCTTAGAGTGCCCGGCAACATACATTGTGAAAGGACTTTGTCGTAGGTGCTGTCTCCCAGAAGTCATTCTTCGTTGCATGCAAgtaagccaa--cagatggtagtgacatgtttacctttttgtgggtgaaaactactaaa---agtaaaatcgaagtcttgata--atattttttcaatgcgagtacat--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781036|gb|FQ466349.1|FQ466349
EST:     GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAG                         GTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTG
genomic: GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctct ... acatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGAGTTG
EST: gi|37190359|gb|CF609708.1|CF609708
EST:     GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAG                         GTTTCTGTTTCACTAGTCCAGTCAGGTGATCCACCTGAAAATCATGATGAG
genomic: GCCTTTGTCGTAGGTGCTGTCTTCCAGAACTTGCTCTTCGATGTATGCAGgtaagcctct ... acatttgcagGTTTCTGTTTCACTGGTCCAGTCAGGTGATCCACCTGAAAATCATGA-G--