Sequence
atgc intronic sequence ATGC exonic sequenceCTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 18
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag
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CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctc---tctactgttta-atatttttcattttattctcaaatta-ttgtcagaatattaa--tgttagggaatct---tttgatgcag--------------
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 18
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag
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CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttc---tctactgttta-atattattcattttattctcgaatta-ttgtaagagtatttaatattagcgactcttatgatgcag------------------
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA18G44160.1 (Glycine max), 5'ss of exon 3
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag
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TTAGTCTTTGTATTTCCCCATTTGGATTTTTGTTGTTGGCTAATGTTTT--TTTGGAGTTTTCTACGGTATATGGAACTATGAGgtggcaacactgcttaacagttttgataatcatgattttcctaacaaaggaatttctaagctctgccttctaaatgagcttgatg----acagcttt---ttctact-----------------
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 18
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgtta-gaatgctag---attttttatgaatctaagttttactttccctacattatgtag
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CTTCTCAATGGCTTTGACAATCATGATTTTCCTGACAAAGGAATTTCAAAGCTCTGCCTCATCAATGAACTTGACGACTCTCTGCTACTTGTTGCATCATgtaatgttcacaactcttgccaccaagtctttcagatgtttgcaagttgattgaatatgggtgttgagtaatggtatctatgtcttacacatgcttttgggat-ttgggtag
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag------------
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------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTC----CAACTCTTTCCAGAGCGTCT---TTTGCAAgttagttattgattgagtat--ggctgttaaaagctcttacttgtggttctgaaatctcatgtaggcgatggatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860965|gb|DT010020.1|DT010020EST: ACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCAT GTGATGGAAATGTTCGGATTTG
genomic: ACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttg ... cattatgtagGTGATGGAAATGTTCGGATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT