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GGATGAAAATTTAACCGCAAAGGTTGCAGATTTTGGTTTGTCTAAACTAGTATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGgtaagtgtttctctacccatagacttattccatcaatcacagcctgcttgataaaatctcaattgcatgtttgcctgagtttgcaacttcacaaggtact...
species | Vitis vinifera |
transcript | Vv08s0056g00100.t01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTG GGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGCEST: gi|27585360|gb|CB008055.1|CB008055
genomic: TATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGgtaagtgttt ... gtggttgcagGGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGC
EST: TATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTG GGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGCEST: gi|33407530|gb|CF213157.1|CF213157
genomic: TATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGgtaagtgttt ... gtggttgcagGGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGC
EST: TATCAGACAGTGCAAAAGGGCATGTTCCAACTCAAGTCAAAGGCACATTG GGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGC
genomic: TATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGgtaagtgttt ... gtggttgcagGGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGAAAATTTAACCGCAAAGGTTGCAGATTTTGGTTTGTCTAAACTAGTATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGgtaagtgtttctctacccatagacttattccatcaatcacagcctgcttgataaaatctcaattgcatgtttgcctgagtttgcaacttcacaaggtact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa