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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctgctccttgatttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagct...

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 18
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctgct-ccttga----------tttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagct
||||||  |  |||   |||||||| ||||||  || |||||||| |||||||| ||||| ||||| | ||||||||||||||||   ||||||||||  ||| ||| |    |||| |          ||| |  ||    |||||     | |    |     | | | | | |        ||   | | || || |           
GGAGGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATACAAAAGCTATGgtacgtgttaaaaccttaaggaactccatttttttttccttttttcttaaaaaaaatgttcattctcacactttttaatcattgtggccggtaaagttat-----------

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 19
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctgctccttgatttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagct
||| ||  |  |||   |||||||| ||||||  || |||||||| |||||||| ||||| ||||| | ||||||||||||||||    |||||||||  ||| |||||  | | |          |||  ||| | | || | |   ||      |   |  ||      | | ||| || |   |    |    || |
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgctaataccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 19
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtg-ctgctccttgatt-----tgtagtcaacatttcta---------------tgccagatgaatttccttta--gattctatgtgtggaatgtttgatgaaattttttttcttagct----------------
||| || |||  ||  || || ||| | ||||   | |  ||||| || ||||||||||||||||| |  ||||||||||||||| |||| |||||||  ||| ||| ||     ||||       | |||  || ||  |||               | ||  ||| ||||||||||  | |||| | | |    |  ||||    |  ||| ||||    |                
GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagagggatttagataatataactagataactctgaatgttacctcatggatttcctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag

upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 20
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgta---tgtgctgctccttgatttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagct-
||| || ||| ||| ||| || ||||||||||   | || || ||||||||||| ||||||||||| |  || ||||| |||||||| || ||||||||||||   | | ||| ||   ||| | |  |     | |   |   ||| |    ||| ||   || || | ||||  |  || |||  ||| | ||    ||   
GGAAGGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGAGGGAAATGAACCGTGCTTCTTCACCACTTATTTTTCATGGGATTCTACTAAAGCTACTgtaaggttttctgttcgcagatatctt-ttggtttattagtatgagaagggggtccctttttttttagg-gtgg--tagttaatgtgattgtgttagagagggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027047|gb|FQ439908.1|FQ439908
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349807848|gb|FQ402239.1|FQ402239
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349819933|gb|FQ404655.1|FQ404655
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349820408|gb|FQ406964.1|FQ406964
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349823009|gb|FQ399988.1|FQ399988
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349812248|gb|FQ411843.1|FQ411843
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349809695|gb|FQ398308.1|FQ398308
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|351053243|gb|FQ456729.1|FQ456729
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349813824|gb|FQ414058.1|FQ414058
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349815297|gb|FQ400452.1|FQ400452
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110376739|gb|EC941812.1|EC941812
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|351015572|gb|FQ426814.1|FQ426814
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110360867|gb|EC924301.1|EC924301
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349810179|gb|FQ401625.1|FQ401625
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAACTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349820692|gb|FQ408521.1|FQ408521
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349809180|gb|FQ398953.1|FQ398953
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTGCTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|351027936|gb|FQ425837.1|FQ425837
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349812839|gb|FQ410481.1|FQ410481
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110378230|gb|EC943350.1|EC943350
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349824653|gb|FQ413320.1|FQ413320
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349819164|gb|FQ412058.1|FQ412058
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349807555|gb|FQ401914.1|FQ401914
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349818825|gb|FQ409359.1|FQ409359
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|351016363|gb|FQ446223.1|FQ446223
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349810657|gb|FQ402900.1|FQ402900
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349818088|gb|FQ408863.1|FQ408863
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349830660|gb|FQ416958.1|FQ416958
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110367116|gb|EC931039.1|EC931039
EST:     ATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: ATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|71870008|gb|DT019063.1|DT019063
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110360995|gb|EC924443.1|EC924443
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349819142|gb|FQ412036.1|FQ412036
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|349820087|gb|FQ404809.1|FQ404809
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAATGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|71870041|gb|DT019096.1|DT019096
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110363622|gb|EC927224.1|EC927224
EST:     AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: AACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
EST: gi|110426531|gb|EC992944.1|EC992944
EST:     TCACTATATATTTTTCTTGGGATTCCACAAAAGCTACT                         GTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC
genomic: TCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctg ... tcgaatgcagGTTCAAGGAAATTCATTTCAGAAGAAGGTCTTCTTACTCTTTGGTGCAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctgctccttgatttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa