Sequence
atgc intronic sequence ATGC exonic sequenceGAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctatcgataagcattgtattcatggactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatgtgcatcagtttgtgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 5'ss of exon 18
GAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctatcgataagcattgtattcatggactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatgtgcatcagtttgtgtt---------
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GAGTGCACAATATTGTTACGTGGATAGGAAGAATCCAGTTGGTTTGATGCTTCTTTCCGAGGTTGCTCTAGGTGACATGTATGAACTGAAGAAAGCCACGgtaaga-tata---aagcctctcact-----accaaaagagaaattctggttataacattaacttgaacttctatctttgctttgaaatatgatcctgctttaaggaat
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA19G34580.1 (Glycine max), 5'ss of exon 18
GAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctatcgataagcattgtattcatggactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatgtgcatcagtttgtgtt--
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AAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCGAAGgtcagtctgttttaatccaatttgtgcatgtagcttttacttcagagaactaaaatcatttttaaagaa--aatcaagaaagtgtgaaaaaattattatttc
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA03G31820.1 (Glycine max), 5'ss of exon 19
GAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctatcgataagcattgtattcatggactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatgtgcatcagttt-gtgtt
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AAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCGCTTGGAAATGTCTATGAGCTCAAGAAAGCTAAGgtcagtctgttttaatccaatttgtgcatgtagcttttacttcagagaaataaaatcagttttaaataaaatcatttttaaataaa-atcaataaagtgta
upper sequence: Vv07s0005g03040.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 5'ss of exon 17
GAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctat-cgataagcattgtattcatg-----gactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatg------tgcatcagtttgtgtt------------------
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AAGTGCTCAGTACTGCTACACTTGTAAGAAAAATCCGGTGGGTCTAATGCTTCTGAGTGAAGTTGCATTGGGAGAAATACATGAGCTAACAAAAGCTAAGgtgagcccatattacagtttttcaggttatgctactaaccatttggttcttatcttgaaaactatatgaaca-acttaagatattacttaccttcatatatgactttctcttatgtcctcaattctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71873215|gb|DT022270.1|DT022270EST: TTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATG TATATGGATAAGCCTCCTGAAGGAAAGCACTCTACAAAAGGACTTGGCAAG
genomic: TTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctat ... cttcatttagTATATGGATAAGCCTCCTGAAGGAAAGCACTCTACAAAAGGACTTGGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAGTCGCCTTGGGAGAGGTTTATGAACTGAGGAAGGCCATGgtgagtctatcgataagcattgtattcatggactcgcatgtgcatactcatgaagtcacatgtgcatactcatgcccttgcatgtgcatcagtttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG