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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g06860.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagt---gttacataacttgtt--ctatt--tgaatgtagtatttttttctaactat-atggtatatttcag
||||| || ||||| || |||||||| |||||||| ||||| || ||||||||||||||||||||| | |     ||||   | |   |  | |||    ||||  ||  ||  ||  | | ||   || || || | | |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctatttacaccattattgaacag-----

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagt---gttacataacttgtt--ctatt--tgaatgtagtatttttttctaactat-atggtatatttcag
||||| || ||||| || |||||||| |||||||| ||||| || ||||||||||||||||||||| | |     ||||   | |   |  | |||    ||||  ||  ||  ||  |   ||   || || || | | |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtccatttacaccattattgaacag-----

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgtta--gatgctcaaa-gtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag
|||||| | || ||||| |||||||| ||||||||||| || || |||||||||||||| ||||||   | || |||    ||||    || |   ||| ||    | |  | ||| ||   ||||   | | | |      
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttgaaatgtatctgtt--gttttcttgtttattaacaacttccttgcacag-----

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgtt--------agatgctcaaagtgttacataacttgt-tctatttgaatgta-gtatttttttctaactatatgg------tatatttcag
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||        |  ||||||||     |  ||   | | | ||| |  || ||  |||| | |||| || |||||       | ||||||||
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatgg------tatatttcag
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||       |||    | | || ||    |||||   ||  | || || | |||| ||||||||       | ||||||||
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttaca-taacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag
|||||| | |||||||| || |||||||||||||||||||| ||||||||||| || ||||||||| ||  |   ||||| || | | ||| | ||||| | ||| |  |  ||| |||| |  ||    |   ||||||
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatc---aagtgctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgattttcag

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag
|||||| | || ||||| || |||||||||||||||||||| ||||||||||| || || |||||| ||   ||||    | |  | ||| | ||||| | ||  | ||  ||| |||| |  ||    |   ||||||
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttgaatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag