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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAATTTCTTTATGGAGATGATGGTATGGATCCAGCAAGGATGGAAGGAAAAGACGGCTTTCCTTTGAATTTTAATAGATTGTTTTTGAAAGTGAAGgtctgaacctggtgccttcagtagtttgtttttttggcacacaagtttttgcgaagttgaacaatacatttagttgaatattgtccttgtacag

Basic information

species Vitis vinifera
transcript Vv06s0004g03740.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 5'ss of exon 18
AGTTCAATTTCTTTATGGAGATGATGGTATGGATCCAGCAAGGATGGAAGGAAAAGACGGCTTTCCTTTGAATTTTAATAGATTGTTTTTGAAAGTGAAGgtctgaacctggtgccttcagtagtttgtttttttggcacacaagtttttgcgaagttgaacaatacatttagttgaatattgtccttgtacag
 || || || || |||||||||||||| |||||||| |||| ||||||||| ||||| ||    || || |||||  ||  ||||||| ||||||| | |||| |              |  |||||||||  |||     |||||        || ||  |      |   | | |  ||| | ||  |  ||
TGTACAGTTCCTCTATGGAGATGATGGCATGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAGCCCTTAAATTTGGATCAATTGTTTATGAAAGTCATGgtcagttttaacatgtaaaaacagtttgtttacttgat---caagt-------gagatgcgcctcgtgt---gctaaccattttactgttgtag

upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G080176_T01 (Zea mays), 5'ss of exon 18
AGTTCAATTTCTTTATGGAGATGATGGTATGGATCCAGCAAGGATGGAAGGAAAAGACGGCTTTCCTTTGAATTTTAATAGATTGTTTTTGAAAGTGAAGgtctgaacctggtgccttcagtagtttgtttttttggcacacaagtttttgcgaagttgaacaatacatttagttgaatattgtccttgtacag
|||||||||| | |||||||||||||| |||||||| |||| ||||||||||||||| ||| | || || |||||  ||  ||||||| ||||||| | |||   |   |  ||     | || ||||||   | | ||   || | |   |  | |     ||    | |  | |                  
AGTTCAATTTTTGTATGGAGATGATGGCATGGATCCTGCAAAGATGGAAGGAAAAGATGGCATGCCCTTAAATTTGGATCAATTGTTTATGAAAGTCATGgtt--agtttaatgtacataatactttgttagatagccatgaaaatgtgctctga-tcatttaacttctattatag------------------

upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 19
AGTTCAATTTCTTTATGGAGATGATGGTATGGATCCAGCAAGGATGGAAGGAAAAGACGGCTTTCCTTTGAATTTTAATAGATTGTTTTTGAAAGTGAAGgtctgaacctggtgccttcagtagtttgtttttttggcacacaagtttttgcgaagttgaacaatacatttagttgaatattgtccttgtacag
| ||||||||  |||||| |||||||| ||||| ||||||   ||||||||||| || ||   |||||| |||||||||||||| ||| |||||||  ||||  |    |   | |||  |||  ||| ||||   |  | |   || ||  ||  ||   ||  |    || ||| || |||           
ACTTCAATTTACTTATGGGGATGATGGAATGGACCCAGCACTAATGGAAGGAAAGGATGGAGCTCCTTTAAATTTTAATAGATTATTTCTGAAAGTTCAGgt--gcttttttcgacttttgtatattggtttt---ggtctctctttatttagagttttgtcacaatcggtacttgcattttgcag--------