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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaactatctattacccaagattaatttttggttcagagaattgaattatatcacataagcaaataggtatattgtgctcgttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03700.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 19
CTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatc--acaactatctattacccaagattaatttttggttcagaga----attgaattatatcacataagcaaat---aggtatat-tgtgctcgttgcag
 ||| ||||||||||||| ||||||||  |||| || |||||||| |||||| |  | ||||||||||||||||||||||| |||||||| ||||||||||||||  | |   |   | |||  | ||| || ||||  || |||      | |   | |    ||  || |||||    | ||| | ||  ||| || |||
ATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGgtatcttagagacaagaactacagatgataaagtttttatttagaagtaatactttttaactctactgaaacaaatttatgttatgtctgcactctttacag

upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA13G40550.1 (Glycine max), 5'ss of exon 17
CTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaactatc-tattacccaagattaatttttggttcagagaa--------ttgaattatatcacataagcaa--ataggtatattgtg-------ctcgttgcag
 ||| | ||||||||||| ||||||||  |||| ||||||| |||||||||| || | ||||||||||||||||||||||| |||||| | || |||||||||||  |   |   ||       ||  || |||||  ||   || |        || |||||  |   |  |  ||  | || | ||||  |       ||| ||||||
ATATCGAGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACATCTAGCAAGCCACAGgtatcttagagacaataactttatagtgtagtttttaattagaagcaatactatttttaattaagttttaatactaaaaacagttttattacgttgttgcctctttgcag

upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA15G04850.1 (Glycine max), 5'ss of exon 18
CTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaactatctattacccaagatt--aatttttggttcagag------------aattgaattata--tcacataagcaaataggtatattgtgctcgttgcag-----------
 ||| | ||||||||||| ||||||||  ||||  ||||||  ||||||||| |  | ||||||||||||||||||||||| |||| | | || |||||||||| | |   | | || ||   | | |  | |||||  ||   ||            |||| |||| ||  |||    |  |||   || |  | | |   ||||             
ATATCGAGATTTGAAGCCAGAAAATGTGTTACTCAAGAGCAACGGGCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATTTAGCAAGCCACAGgtattatagaga-caataacttgatagtgtagtttttaattagaagcaatactattttaattaaattttacttcaggccactaaaacagttttatttacgtcttgctccctctttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731676|gb|EE106306.1|EE106306
EST:     TTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
EST: gi|30324849|gb|CD008111.1|CD008111
EST:     TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
EST: gi|32267450|gb|CD716413.1|CD716413
EST:     TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
EST: gi|351036173|gb|FQ464018.1|FQ464018
EST:     TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
EST: gi|30251622|gb|CB969355.1|CB969355
EST:     TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
EST: gi|30325043|gb|CD008305.1|CD008305
EST:     TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAG                         CTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG
genomic: TGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatcacaac ... ctcgttgcagCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAG