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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtgtgatcatttaatatttgatgtcctgctgctaacagattatttctttttctgtttgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01200.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G087749_T01 (Zea mays), 5'ss of exon 3
---ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatg---ctttgctgtgtgatcatttaatatt-tgatgtcctgctgctaacagattatttctttttctgtttgcag
    |||||| | ||||   ||    | ||   ||||||| ||  ||| |||  |||||||||||||||||||||||||| | || ||||| || ||||| ||||| |  | || |      |    | |   || || |  |||  |  |    |||   |  |  | | ||||||  ||| | |  ||
TTGGTGGAAATGCTGAAGGACACTGTATCA---AGCCTGAGATTTTGTTAAATGTTTGTGAACTGCTGTGCTTTTGTGTTGTTCATCATCCCTACAGAATTAAgtactgctctgtacaaacttccattataccatgatcttctatgatctttatatgcatgttcctaaatgtttcttaatct-tgtatag

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA09G04260.1 (Glycine max), 5'ss of exon 18
ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtg----tgatcatttaatatt--tgatgtcctgctgctaacagattatttctttttctgtttgcag
 |||   |||| |  ||||||     |||||||| || ||||| |||||||| |||||  |||| |||||||||||  | ||||||||||| || |||||||| |   ||   ||||  || ||       || | || || ||  ||||    |  ||  |      |   ||| |  || |||||||
GTGGCCTAGTTAAGTATCAGAGTGGGACAAAGCCAGAGATACTATCAAACATATGTGACTTGCTATGCTTTTGTGTCCTACACCATCCATACAGGATAAAgtatttccttct-tgctaggcagtaaacagaatgactttatgttgctgatcatttcatgtgattgtgatgggtctctgcct-tttgcag

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 18
ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtgtgatcatttaatatttgatgtcctgc-tgctaacag-----attatttctttttctgtttgcag
   ||| | || |   ||||||    |||||||| || ||||| |||||||| |||||| | || |||||||||||  | || |||||||| ||||||||||| |   |||  |||| ||| || |     || | | |||| |||   || ||  ||        ||  ||   ||| ||||||  ||
GACGAAGAATTCAGTGTCAGATTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgt-tgctctgcagtatcg--gttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA07G37040.1 (Glycine max), 5'ss of exon 16
ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtgtgatcatttaatatttgatgtcctgc-tgctaacag-----attatttctttttctgtttgcag
   ||| | || |   |||||     |||||||| || ||||| |||||||| |||||| |  | |||||||||||  | || |||||||| ||||||||||| |   |||  |||| ||| || |     || | | |||| |||   || ||  ||        ||  ||   ||| ||||||  ||
GACGAAGAATTCAGTGTCAGAGTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgt-tgctctgcagtatcg--gttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184362|gb|CF603716.1|CF603716
EST:     ATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAA                         GTGCAACTTTCTCCTCAATAATGTGATAGATAAAGTTCTGTTTCTAACTCG
genomic: ATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatctttt ... ctgtttgcagGTGCAACTTTCTCCTCAATAATGTGATAGATAAAGTTCTGTTTCTAACTCG