1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAGgttagttttcatgtctaattttcttattttaaatagcagcatatgattgtgatcttatgtcaatgtggtaattttttaagtttgtgcttattatgtcaat...
species | Vitis vinifera |
transcript | Vv05s0049g00190.t01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAG GTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCAEST: gi|351014200|gb|FQ434789.1|FQ434789
genomic: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAGgttagttttc ... atgttaatagGTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCT
EST: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAG GTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCTEST: gi|351041158|gb|FQ444135.1|FQ444135
genomic: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAGgttagttttc ... atgttaatagGTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCT
EST: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAG GTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCT
genomic: AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAGgttagttttc ... atgttaatagGTTTTACAATCAAGAACAAATCCGACCTTTGTGTCATGGAAAGGTGGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTTACATGCAATTCCTTCAAATGAAGCAATTGATACCGTTGAGgttagttttcatgtctaattttcttattttaaatagcagcatatgattgtgatcttatgtcaatgtggtaattttttaagtttgtgcttattatgtcaat
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - AAGCAA