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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtccttttgcttaaattcctttatacttgtttattgtttacttgagcattagtcagcactatatttttctctatggtattgctttatgt...

Basic information

species Vitis vinifera
transcript Vv04s0008g04890.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtc-atttgtccttttgcttaaattcctttatacttgtttattgtttacttgagcattagtcagcactatatttttctctatggtattgctttatgt---
||||||||||||||| ||| | || ||||||||||||||||| ||||| |||||||| || ||||||||||| ||  || ||||| | ||||||||||||||||||| |  | ||||||   |   |||  |||    |||  |||  ||    | |  | |  |  | | | |||||   ||    ||     | |||||   
AGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAACAAGTTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctacgtatcctttcctt---atttgtttccttttgagtatatttggaatcacaaattttgggaatt-tatttgattcatgagtggaattctatgtttg

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtccttttgcttaaattcctttatacttgtttattgtttacttgagcattagtcagcactatatttttctctatggtattgctttatgt-----
||||||||| ||||||||| | || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||  || ||||| | ||||||||||||||||||| |   ||||||  | | | ||  |||    |||  |||  ||    | |  | |  |  | | |  ||||   |||    |     |||||||     
AGGGGAGTGCGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtc-tacatccttt--ccttattttgtttccttttgagtatgtttggaatcacaaattttgggaattg-atttgattctg-aatggaaatttatgtttgaa

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtccttttgcttaaattcctttatacttgtttattgtttacttgagcattagtcagcactatatttttctctatggtattgctttatgt---
|||||| |||||||||||  | || ||||||||||| ||||| ||  | | |||||| |||||||| ||  | |||||||||||||| || ||||||||||||||||     || ||||  || | ||  || ||   | ||  || |||  | | | ||| |   |   | |         ||||  |||  || |      
AGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGgcaagtctgcattcttttttattcagttt-ttcatttcttttcgtttttttttggtgaatttggttgt-ttgt-ccccaaaatatgaaattaattgacaaaga

upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtccttttgcttaaattcctttatacttgtttattgtttacttgagcattagtcagcactat-atttttctctatggtattgctttatgt
 ||||| |||||||||||  | || ||||| || || ||||| ||    | |||||| |||||||| ||  | |||||||||||||| || ||||||||||||||||     || ||||  || | ||  || ||   | ||  || |||| ||     || || |   |  |  |||  | |     |||    |||   
TGGGGAATGTGTTCATGAACTTAGCTGTAACGGAAATAAGTTTCATAAATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGgcaagtctacattcttttttatttacttttttcatttcttttcgttttttatttttattttggtgaattcggttgtttgcccccgaaatatgaaattaat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389658|gb|EC954515.1|EC954515
EST:     GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|22011770|gb|BQ796804.1|BQ796804
EST:     GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|110389080|gb|EC953893.1|EC953893
EST:     GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|110418997|gb|EC985186.1|EC985186
EST:     GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT