Sequence
atgc intronic sequence ATGC exonic sequenceTGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttgtttgttcaaggaactttgtctacataatatataaattggtatactatgatcatgcca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os04g59494.4 (Oryza sativa), 5'ss of exon 18
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttg--tttgttcaaggaacttt---gtctacataatatataaattggtatactatgatcatgcca
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AGATATATTTATGCCACCACTAATCACAAAATGGCAGCAACTTGCCAACTCTGATAAAGATTTATTCCCACTGCTCGAATGCTTTACATCTATCGCTCAGgtacttac---agtttttgtctgtgcttaccttctctagtttgaacatgctaaatttgatttgaaggtcccttcatacccattttagagcatctt--ttgcgata
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 18
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttgtttgttcaaggaactttgtctacataatatata---aattggtatactatgatcatgcca----
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AGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATTGCACAGgtact----gtggttttaatctg--tggaaatcat-ctatgttttttctgaatataccttatctggaaatcatctattgaaacagtttggagtaggagttgctttta
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttctt--ttgaccttaagctatgttatttgtttgttcaaggaactttg-tctacataatatataaattg-gtat--actatgatcatgcca-------------------------------------------
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TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaactgtacatcatatctattttcttgctcctgatggtgttccatttgatacag
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttgtttg---ttcaaggaactttgtctacataatatataaattg-gtat--actatgatcatgcca--------------------------------------------
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TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacg-atctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagc---tatgttatttgtttgttcaaggaactttgtctacataatatataaattggtatactatgatcatgcca-
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TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctac----ttgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34550426|gb|CF518644.1|CF518644EST: CAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAG GCATTGGGTACCGGGTTTTCTCAATTTGCTGAGCCCGTCTTTCAGAGGTGC
genomic: CAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacga ... ctccttccagGCATTGGGTACCGGGTTTTCTCAATTTGCTGAGCCCGTCTTTCAGAGGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttgtttgttcaaggaactttgtctacataatatataaattggtatactatgatcatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaac