1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccataagaggctgtccctaaagattggctttcacagcatttccaccaaaaagcatacccatagatattattcatttgcttgctaaatccatttt...
species | Vitis vinifera |
transcript | Vv00s0211g00060.t01 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|26263230|gb|CA814293.1|CA814293
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|34319398|gb|CF372152.1|CF372152
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|34543594|gb|CF511826.1|CF511826
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|33408872|gb|CF214499.1|CF214499
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGTAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|71887581|gb|DT036636.1|DT036636
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|77587212|gb|DV222739.1|DV222739
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|110386136|gb|EC950712.1|EC950712
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGAEST: gi|33408956|gb|CF214583.1|CF214583
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
EST: CTGTAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAG GCTGTGGAGGAAACAGGGAAAAAGTTCCGAGAAACCGTGCTTGCTCTTGGA
genomic: CTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccat ... cttgcaacagGCTGTGGAGGAAACAGGGAAAAAGTCCCGAGAAACCGTGCTTGCTCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGATTGGATGATGAGAAGgtatgtccataagaggctgtccctaaagattggctttcacagcatttccaccaaaaagcatacccatagatattattcatttgcttgctaaatccatttt
- - - - - - - - CTGCAG
- - - - - - - - - GCAGAT
- - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaag