Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgttgatcattttttttctcattaaaatcttagctatgtaatttatttttgtctttaatggtgtacttcggaactttccgtttcag

Basic information

species Vitis vinifera
transcript Vv00s0144g00010.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA07G14770.1 (Glycine max), 5'ss of exon 47
TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgttg--atcattttttttctcattaaaatcttagctatgtaatttatttttgtctttaatggtgtactt---cggaactttccgtttcag
|||||| |||||| |||| ||||| |||||| | ||| |||| || |||||||| ||||||| |||||||||||| ||||| |||||||| ||  | ||||| ||   |||   |  |||     |    |  | | || | |   |    ||| | |   || | |   |     |  |||     | |||
TGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCACGTAGTATGAGGCTGCCAGATCCATCTACTCCTAATCTGAAGgtcttataatctcatacttttatcgttttgttatggttaaggagcattaagttggcgtagttgatatgactgccttgtgcttctttatgcag

upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA03G27260.1 (Glycine max), 5'ss of exon 30
TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgtt-gatcattttttttctcattaaaatcttagctatg--taatttatttttgtctttaatggtgtacttcggaactttccgtttcag-------
|||||| ||||||||||| ||||| |||||| | ||| |||| || |||||||  || |||| |||||||||||| || || |||||||| || || ||||| || ||   | ||   |  | |||||   ||   || |  |||      ||    |    | ||  |  |   | | ||    ||| |       
TGATGTTATTCCTTCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATGTCCGCGTAGTATGAGGCTGCCAGACCCATCTACTCCTAAATTGAAGgtcttagaatctcttacctacctttaaacgtttgtttaagattaaggagcattaagttgacgtagttgatgtgacagccttattcttctgtacacag

upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA03G27270.1 (Glycine max), 5'ss of exon 47
TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgtt-gatcattttttttctcattaaaatcttagctatg--taatttatttttgtcttta-atggtgtacttcggaactttccgtttcag-------
|||||| |||||| |||| ||||| |||||| | ||| |||| || |||||||| || || | |||||||||||| || || |||||||| || || ||||| || ||   |  |  ||  | |||||   ||   || |  |||   |   ||   || |  | ||  |  |     | ||  | ||| |       
TGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGCAGTATGAGGCTGCCAGACCCATCTACTCCTAATTTGAAGgtcttagaatctcatacttacctttaaacgtttgtttaagattaaggaagcattaagttgacgtagttgatgtgactgccttgtgcttctgtacacag

upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgttgatcattttttttctcattaaaatcttagctatgt---aatttatttttgtctttaatggtgtacttcggaactttccgtttcag
|||||||||||||||||| ||||| || ||||| ||| | ||||||||| | || ||||| || |||||||| |||||||||||||| || || ||||||||         |  |         |  || ||    || |   ||   |  | | |   |  | |  |   |       |||  || |||
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttc-attgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543098|gb|CF511330.1|CF511330
EST:     CATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAG                         ATTGATTTGTTAGCAGAGATCAATCAATCCCCACGCATATTCTCAGAGGTG
genomic: CATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgttgatca ... tccgtttcagATTGATTTGTTAGCAGAGATCAATCAATCCCCACGCATATTCTCAGAGGTG