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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcccacaaccccatactgcatgtcacaacattaggaccatacagctgtttatcttattttattaggaaagcagtttgacagcgtgaccagtca...

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 17
GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGC---TGgtttgtttcccacaaccccatactgcatgtcacaaca-ttaggaccatacagctgtttatcttattttattaggaaagcagtttgaca-gcgtgaccagtca---------------------------------------------------
  | ||||  |||||||||||||||||||| ||| | || ||||| || |||||||||||| | ||||| |||||||| || ||   | ||| ||||    |  |   |||| || |   | ||   ||    || | |  |    |    ||     |  |  ||    |||| ||    ||  || ||                                                    
AGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGAAGCTATCAGAATTGCTAATGACACTAACGCAGgtagttcgtttggttcttctttatacagccttgaagaatggtttttgccctccctccccctcctatacagcctaggttaatagttttgtcatatttggtcactcttggtttaatgttgtgaaactttggaacatggaactgcctgtacatatgaag

upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 17
GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgt-----ttgtttcccac------aaccccatactgcatgtcacaacatt-aggacca---tacagctgtttatcttattttattaggaaagcagt-ttgacag------cgtgaccagtca-------------------------------------------------------
  | ||||  |||||||||||||||||||| ||| | || ||||| || ||||| |||||| | ||||| || ||||| ||||| |||     ||||  | |        |     || || | |   ||| | || | ||  |   |    |       ||     |  ||   |  |  | || | ||      | |  | |||||                                                       
AGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACTAATGCAGgtagttcttgtggctctagtttcaagtttgattcttctttatacagccttgaagaatagtttttgccctcccccctccccctcctatacagcctatgttaatagttttgtcatatctagtcactcttggtttaacgttgtcaaactttggaccatggatctacctgtacatatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27586388|gb|CB009083.1|CB009083
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|351040417|gb|FQ434550.1|FQ434550
EST:     CTTTAAAACCGGGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110360909|gb|EC924352.1|EC924352
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|30302041|gb|CB978835.1|CB978835
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|32245740|gb|CD711559.1|CD711559
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|30128391|gb|CB913730.1|CB913730
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|29785203|gb|CB341997.2|CB341997
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|352765000|gb|FQ473648.1|FQ473648
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|77586300|gb|DV222253.1|DV222253
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|351018416|gb|FQ439228.1|FQ439228
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|349820783|gb|FQ404157.1|FQ404157
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|34320384|gb|CF373138.1|CF373138
EST:     GGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: GGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|77580016|gb|DV218890.1|DV218890
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|33407655|gb|CF213282.1|CF213282
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110373835|gb|EC938222.1|EC938222
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110395231|gb|EC960880.1|EC960880
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110384512|gb|EC948953.1|EC948953
EST:     CTTTAAAACCCAGTAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110363491|gb|EC927084.1|EC927084
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110378892|gb|EC944048.1|EC944048
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110393201|gb|EC958271.1|EC958271
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110714572|gb|EE091629.1|EE091629
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110420827|gb|EC987109.1|EC987109
EST:     TAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: TAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110418290|gb|EC984428.1|EC984428
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110728458|gb|EE104042.1|EE104042
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|34543207|gb|CF511439.1|CF511439
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|30128422|gb|CB913761.1|CB913761
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|161716149|gb|FC069492.1|FC069492
EST:     CTTTAAAACCGAGGATGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|33407050|gb|CF212677.1|CF212677
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|352763958|gb|FQ465408.1|FQ465408
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|30134739|gb|CB920077.1|CB920077
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|351029837|gb|FQ427677.1|FQ427677
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110430209|gb|EC996749.1|EC996749
EST:     CCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110686641|gb|EE064513.1|EE064513
EST:     CTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|352769124|gb|FQ471072.1|FQ471072
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110693458|gb|EE069709.1|EE069709
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110371647|gb|EC935762.1|EC935762
EST:     TAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: TAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110375935|gb|EC940965.1|EC940965
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|32459450|gb|CD800624.1|CD800624
EST:     CCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTTTATGTATTCACTGAAAACGTGCAACGTATGTGGGGTGT
genomic: CCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGC--TTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGT
EST: gi|29781739|gb|CB346445.2|CB346445
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|27586231|gb|CB008926.1|CB008926
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|30251721|gb|CB969454.1|CB969454
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCGCTGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGGTGGTGTGTC
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATG-TGGCGTGTC
EST: gi|37190549|gb|CF609898.1|CF609898
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCACCGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|351040173|gb|FQ425259.1|FQ425259
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
EST: gi|110688619|gb|EE067379.1|EE067379
EST:     CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTG                         GTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA
genomic: CTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcc ... acatgtgcagGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGgtttgtttcccacaaccccatactgcatgtcacaacattaggaccatacagctgtttatcttattttattaggaaagcagtttgacagcgtgaccagtca

- - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaag