Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTATATTTTCACAAAAAACCTACAACGATCTTGGCGTGTCTCTGAAGTTCTTGAATATGGACTTGTTGGTGTCAGTGAAGGATTAATTCCGACAGTGgtgagtcttatactgcatctagcaatgaataagcatgcaaatatttagattagctgaatagttgtatgccttcattacag

Basic information

species Vitis vinifera
transcript Vv19s0085g00870.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00870.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 18
TGCCTATATTTTCACAAAAAACCTACAACGATCTTGGCGTGTCTCTGAAGTTCTTGAATATGGACTTGTTGGTGTCAGTGAAGGATTAATTCCGACAGTGgtgagtcttatactgcatctagcaat---gaataagcatgcaaatatt-tagattagctgaa-tagttgtatgccttcattacag
| | || || || ||||| |   | |||||||| ||||||||  |||| | ||| |||||||||||||| ||||| | ||||||| ||||| | || | |||   ||| || |   ||  |   ||    ||| |  ||| || | || |  ||  | | |  ||  || |||| || ||   ||
TTCATACATATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTAGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCAACTGAGgtacatctcattccttattaaatgatatcaaatgacaatggaatttttgttcatgggtttatctacatgcatgctttgat-gtag

upper sequence: Vv19s0085g00870.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 18
TGCCTATATTTTCACAAAAAACCTACAACGATCTTGGCGTGTCTCTGAAGTTCTTGAATATGGACTTGTTGGTGTCAGTGAAGGATTAATTCCGACAGTGgtgagtcttatactgcatctagcaat---gaataagcatgcaaatatt-tagattagctgaa-tagttgtatgccttcattacag
| | ||| | || ||||| |   | |||||||| ||||||||  |||| | ||||||||||||||| || ||||| | ||||||| ||||| | || | ||||  ||| || |   ||  |   ||    | | |  ||| || | || | |||  | | |  ||  || |||  || ||   ||
TTCATATGTATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTAGTGGGTGTTAATGAAGGAGTAATTTCAACTGAGgtgcatctcattccttattaaatgatatcaagtgacaatggaatttttgttgatgggtttatctacgtgcatgtgttgat-gtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361758|gb|EC925254.1|EC925254
EST:     TTCTTGAATATGGACTTGTTGGTGTCAGTGAAGGATTAATTCCGACAGTG                         ATGGCTCCGGTTAGTGGGTTTAAGAATACTGGTCTTGGACAAGAAGGATCC
genomic: TTCTTGAATATGGACTTGTTGGTGTCAGTGAAGGATTAATTCCGACAGTGgtgagtctta ... ttcattacagATGGCTCCGGTTAGTGGGTTTAAGAATACTGGTCTTGGACAAGAAGGATCC