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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCGAAGGATAAGAAGGCCAATGGGCCTGATTCAGGAAAGAACACCAGTCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttcttgtcctagttcattgtgctctacttaggtggatagtcctctggtttttgttttgacttacaattttaaataaaacaaatttttaattaatcttgcag

Basic information

species Vitis vinifera
transcript Vv18s0089g00350.t01
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719802|gb|FC065762.1|FC065762
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|32270986|gb|CD720145.1|CD720145
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|161714373|gb|FC063214.1|FC063214
EST:     TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
EST: gi|37185438|gb|CF604791.1|CF604791
EST:     TCTTGTTTTC-AGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAG                         CCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT
genomic: TCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttctt ... aatcttgcagCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTCGAAGGATAAGAAGGCCAATGGGCCTGATTCAGGAAAGAACACCAGTCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGgtttgttcttgtcctagttcattgtgctctacttaggtggatagtcctctggtttttgttttgacttacaattttaaataaaacaaatttttaattaatcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG