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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGCCCATTCAGAGTTGTCTAGTGTATTCTATGAGAAGGTTCTGCTTCTTGCCTGGGGgtaagaaaaaccttttttttttttttccccacattttagatgtattagaaattaacaatctcaaaaaagtgaaataatgaatatattgtgcatgattgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g13410.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 19
CCTCGCCCATTCAGAGTTGTCTAGTGTATTCTATGAGAAGGTTCTGCTTCTTGCCTGGGGgtaagaaaaaccttttttttttttttccccacattttagatgtattagaaattaacaatctcaaaaaagtgaaataatgaatatattgtgcatgattgcag
||| || ||||| |||||||| ||||| |||||||| || ||||||||||| |||||||||||||       || |||  || | ||     | | || |||  || |  |||||   | |   |    | ||    || || | |||||  |||| ||||
CCTAGCTCATTCGGAGTTGTCCAGTGTTTTCTATGACAAAGTTCTGCTTCTGGCCTGGGGgtaag-------ttgtttagttgtgtc-----aatgtaaatg-gttggctattaaggttatttgatgcattaaccc-tgtatgt-ttgtgactgat-gcag

upper sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 17
CCTCGCCCATTCAGAGTTGTCTAGTGTATTCTATGAGAAGGTTCTGCTTCTTGCCTGGGGgtaagaaaaaccttttttttttttttccccacattttagatgtattagaaattaacaatctcaaaaaagtgaaataatgaatatattgtgcatgattgcag
| | || |||||||||||||| ||||| |||||||| || ||||| ||||| |||||||||||||       || |||  || | ||       | || |||  || |  |||||   | |   |    | ||      |   | |||||  |||| ||||
CTTAGCTCATTCAGAGTTGTCGAGTGTTTTCTATGACAAAGTTCTCCTTCTGGCCTGGGGgtaag-------ttgtttggttgtgtca------tgtaaatg-gttggctattaaggttatttgatgcattaaccctgtatgtttttgtgactgat-gcag